View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4780_low_1 (Length: 673)

Name: NF4780_low_1
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4780_low_1
NF4780_low_1
[»] chr7 (12 HSPs)
chr7 (1-673)||(28597905-28598576)
chr7 (361-483)||(6056241-6056363)
chr7 (369-462)||(44481296-44481389)
chr7 (366-442)||(24251645-24251721)
chr7 (366-432)||(16732139-16732205)
chr7 (366-432)||(17710273-17710339)
chr7 (377-451)||(24139228-24139302)
chr7 (366-432)||(29200870-29200936)
chr7 (366-419)||(9328530-9328583)
chr7 (366-419)||(30824422-30824475)
chr7 (366-418)||(22289447-22289499)
chr7 (361-417)||(47580076-47580132)
[»] chr4 (14 HSPs)
chr4 (361-496)||(21163296-21163430)
chr4 (361-496)||(39251557-39251692)
chr4 (361-483)||(40727164-40727286)
chr4 (370-498)||(33582900-33583025)
chr4 (366-451)||(49951519-49951604)
chr4 (366-419)||(32576976-32577029)
chr4 (366-418)||(51259458-51259510)
chr4 (366-442)||(51734877-51734953)
chr4 (371-442)||(29655571-29655642)
chr4 (366-432)||(37245767-37245833)
chr4 (366-419)||(28426389-28426442)
chr4 (366-419)||(49119328-49119381)
chr4 (366-418)||(44936011-44936063)
chr4 (366-418)||(56065839-56065891)
[»] chr1 (11 HSPs)
chr1 (361-496)||(17975231-17975365)
chr1 (361-483)||(13075894-13076015)
chr1 (369-485)||(323765-323881)
chr1 (361-429)||(23756386-23756454)
chr1 (366-451)||(5609545-5609630)
chr1 (369-451)||(4395367-4395449)
chr1 (370-462)||(24538697-24538789)
chr1 (366-442)||(51113521-51113597)
chr1 (366-419)||(44527459-44527512)
chr1 (366-419)||(44602958-44603011)
chr1 (366-418)||(48949653-48949705)
[»] chr3 (8 HSPs)
chr3 (361-485)||(18720840-18720964)
chr3 (366-496)||(49525045-49525175)
chr3 (366-451)||(34497268-34497353)
chr3 (366-418)||(55199717-55199769)
chr3 (370-432)||(26046898-26046960)
chr3 (366-416)||(42340208-42340258)
chr3 (366-419)||(53497238-53497291)
chr3 (366-418)||(27608832-27608884)
[»] chr6 (7 HSPs)
chr6 (363-496)||(22534501-22534637)
chr6 (382-478)||(5542589-5542685)
chr6 (361-485)||(33792019-33792143)
chr6 (366-419)||(11731597-11731650)
chr6 (366-408)||(3100452-3100494)
chr6 (368-418)||(27443141-27443191)
chr6 (366-419)||(14680368-14680421)
[»] chr2 (6 HSPs)
chr2 (361-492)||(25538098-25538229)
chr2 (366-442)||(34695809-34695885)
chr2 (366-442)||(34718221-34718297)
chr2 (366-419)||(9710161-9710214)
chr2 (366-439)||(13109777-13109850)
chr2 (366-419)||(12130566-12130619)
[»] chr5 (10 HSPs)
chr5 (361-485)||(32378146-32378269)
chr5 (366-451)||(23075038-23075123)
chr5 (366-451)||(22767169-22767254)
chr5 (366-418)||(26597386-26597438)
chr5 (366-442)||(27532811-27532887)
chr5 (366-451)||(4268305-4268390)
chr5 (366-419)||(20205161-20205214)
chr5 (366-451)||(25731014-25731099)
chr5 (366-451)||(27292640-27292724)
chr5 (366-418)||(8388292-8388344)
[»] scaffold0252 (1 HSPs)
scaffold0252 (368-485)||(13329-13444)
[»] chr8 (6 HSPs)
chr8 (58-153)||(12326266-12326361)
chr8 (368-496)||(8670165-8670293)
chr8 (366-442)||(477961-478037)
chr8 (370-442)||(11870474-11870546)
chr8 (366-432)||(7127429-7127495)
chr8 (366-451)||(40588626-40588711)
[»] scaffold0003 (1 HSPs)
scaffold0003 (368-418)||(44170-44220)
[»] scaffold0446 (1 HSPs)
scaffold0446 (366-418)||(396-448)


Alignment Details
Target: chr7 (Bit Score: 625; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 1 - 673
Target Start/End: Complemental strand, 28598576 - 28597905
Alignment:
Q  1 agtgttgaaagtggaaaagaaatttttaatcatgaggaatatacaaggattattagtactccttgtattggtttgaaaccaaatggttttgtttctgagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28598576 agtgttgaaagtggaaaagaaatttttaatcatgaggaatatacaaggattattagtactccttgtattggtttgaaaccaaatggttttgtttctgagg 28598477  T
Q  101 cttctagagaaagtggtgttgttatcataaacagcttggctcttgttgaaactttaatggattcagtaagcctttttcaactacttcattcaattttctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28598476 cttctagagaaagtggtgttgttatcataaacagcttggctcttgttgaaactttaatggattcagtaagcctttttcaactacttcattcaattttctc 28598377  T
Q  201 caacttctcttcttagcctttcaattattcttggcttaggatgatttatttatttttcattttacatggatgaatatatttagtactatagtaaaattta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28598376 caacttctcttcttagcctttcaattattcttggcttaggatgatttatttatttttcattttacatggatgaatatatttagtactatagtagaattta 28598277  T
Q  301 ttaagaaaaaattgaagaaatgaaaattattattaataccggcgacactaatgactactcttattttccaactttgaggtgaagtttgtcaggcgtcaag 400  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28598276 ttaagaaaaaattgaagaaatgaaaattattattaataccggtgacactaatgactactcctattttccaactttgaggtgaagtttgtcaggcgtcaag 28598177  T
Q  401 cgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgtttttgagatttgtcctccttatattgaatcttttttaaattg 500  Q
    | |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28598176 caaacatggctgctcatacgattgctagggcggcatattcttagcctagtcgccatgtttttgagatttgtcctccttatattgaat-ttttttaaattg 28598078  T
Q  501 aactatattatgtaggttacataatcaagctatttttaactactagtttactagtatagaatatttttgaaactagaaagcaatttaatttgtttgatga 600  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  28598077 aactatatcatgtaggttacataatcaagctattttttactactagtttactactatagaatatttttgaaactagaaagcaattttatttgtttgatga 28597978  T
Q  601 taaaattattatagactaattttatattttgtcttaataaatttatgttgcataaataattttttcagtggtg 673  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28597977 taaaattattatagactaattttatattttgtcttaataaatttatgttgcataaataattttttcagtggtg 28597905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 361 - 483
Target Start/End: Complemental strand, 6056363 - 6056241
Alignment:
Q  361 ttattttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgttt 460  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||| || ||||||||||||||||||| ||||||||| |||||||||||||||||    
T  6056363 ttattttccaactttgaggtgaagtttgttgggcgtcaagcgaacatggttgttcatacgattgctagggcggcatgttcttggcctagtcgccatgttt 6056264  T
Q  461 ttgagatttgtcctccttatatt 483  Q
    || | ||||||||||||| ||||    
T  6056263 tttaaatttgtcctccttctatt 6056241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 369 - 462
Target Start/End: Original strand, 44481296 - 44481389
Alignment:
Q  369 caactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgttttt 462  Q
    |||||| |||||||||||||| ||| | ||||||||||||| |||||||||  | ||||||||| | ||||||| | |||||| |||| |||||    
T  44481296 caacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggctagtcaccatattttt 44481389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 24251645 - 24251721
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttctt 442  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| |||||||||  | ||||||||| | |||||||    
T  24251645 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttctt 24251721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 432
Target Start/End: Original strand, 16732139 - 16732205
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcg 432  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| |||||||||  | |||||||||    
T  16732139 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcg 16732205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 432
Target Start/End: Original strand, 17710273 - 17710339
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcg 432  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| |||||||||  | |||||||||    
T  17710273 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcg 17710339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 451
Target Start/End: Original strand, 24139228 - 24139302
Alignment:
Q  377 aggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtc 451  Q
    ||||||||||||| ||| | ||||||||||||| |||||||||  | ||||||||| | ||||||| | ||||||    
T  24139228 aggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggctagtc 24139302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 366 - 432
Target Start/End: Complemental strand, 29200936 - 29200870
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcg 432  Q
    ||||||||| |||||||||||||| ||| | ||| ||||||||| |||||||||  | |||||||||    
T  29200936 ttccaacttcgaggtgaagtttgttaggagacaaacgaacatggttgctcatactttagctagggcg 29200870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 419
Target Start/End: Complemental strand, 9328583 - 9328530
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatac 419  Q
    ||||||||| || ||||||||||| ||| | ||||||||||||| |||||||||    
T  9328583 ttccaacttcgatgtgaagtttgttaggagacaagcgaacatggttgctcatac 9328530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 419
Target Start/End: Complemental strand, 30824475 - 30824422
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatac 419  Q
    |||||||||||| ||||||||||| ||| |  |||||||||||| |||||||||    
T  30824475 ttccaactttgaagtgaagtttgttaggagataagcgaacatggttgctcatac 30824422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 22289447 - 22289499
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcata 418  Q
    ||||||||| ||||||| |||||| ||| | ||||||||||||| ||||||||    
T  22289447 ttccaacttcgaggtgatgtttgttaggagacaagcgaacatggttgctcata 22289499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 361 - 417
Target Start/End: Original strand, 47580076 - 47580132
Alignment:
Q  361 ttattttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcat 417  Q
    |||| ||||||||| |||||||||||||  ||| | ||||||||||||| |||||||    
T  47580076 ttatattccaacttcgaggtgaagtttggtaggagacaagcgaacatggttgctcat 47580132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 1e-46; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 361 - 496
Target Start/End: Complemental strand, 21163430 - 21163296
Alignment:
Q  361 ttattttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgttt 460  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||  ||||||| ||||||||    
T  21163430 ttattttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatgactgctcatacgattgctaaggcgacatgttcttgacctagtcaccatgttt 21163331  T
Q  461 ttgagatttgtcctccttatattgaatcttttttaa 496  Q
    || ||||| ||||||||| ||||| |||||||||||    
T  21163330 tttagattcgtcctccttgtattg-atcttttttaa 21163296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 361 - 496
Target Start/End: Complemental strand, 39251692 - 39251557
Alignment:
Q  361 ttattttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgttt 460  Q
    ||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||   ||||||||| |||||| ||||||||||    
T  39251692 ttattttccaactttgaggtgaagtttatcaggcgtcaagtgaacgtggctgctcatacgattgctagggtagcatgttcttggcctagacgccatgttt 39251593  T
Q  461 ttgagatttgtcctccttatattgaatcttttttaa 496  Q
    |||||||||||||||||| |||||||| ||||||||    
T  39251592 ttgagatttgtcctccttgtattgaatattttttaa 39251557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 361 - 483
Target Start/End: Original strand, 40727164 - 40727286
Alignment:
Q  361 ttattttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgttt 460  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||| | |||||||||||||||||||| |||||||| || ||||||||||||||| |    
T  40727164 ttattttccaactttgaggtgaagtttgttaggcgtcaagcgagcatagttgctcatacgattgctagggagacatgtttttggcctagtcgccatgtat 40727263  T
Q  461 ttgagatttgtcctccttatatt 483  Q
    |||||||||||||||||||||||    
T  40727264 ttgagatttgtcctccttatatt 40727286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 370 - 498
Target Start/End: Original strand, 33582900 - 33583025
Alignment:
Q  370 aactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgtttttgagattt 469  Q
    ||||||||||| ||||||   ||||| |||||||||||||||||||| ||  |||||| |||| | ||||||| | ||||||  | | | ||||||||||    
T  33582900 aactttgaggtaaagttt---aggcgacaagcgaacatggctgctcacactcttgctaaggcggcttgttcttgggctagtcatcgtatatttgagattt 33582996  T
Q  470 gtcctccttatattgaatcttttttaaat 498  Q
    ||||| ||| |||||| ||| ||||||||    
T  33582997 gtcctgcttgtattgattctattttaaat 33583025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 366 - 451
Target Start/End: Original strand, 49951519 - 49951604
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtc 451  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| |||||||||  | ||||||||| | ||||||| | ||||||    
T  49951519 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggctagtc 49951604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 366 - 419
Target Start/End: Complemental strand, 32577029 - 32576976
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatac 419  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| |||||||||    
T  32577029 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatac 32576976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 51259510 - 51259458
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcata 418  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| ||||||||    
T  51259510 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcata 51259458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 442
Target Start/End: Complemental strand, 51734953 - 51734877
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttctt 442  Q
    ||||||||| |||||||||||||| ||| | |||| |||||||| |||||||||  | ||||||||| | |||||||    
T  51734953 ttccaacttcgaggtgaagtttgttaggtgacaagtgaacatggttgctcatactttagctagggcggcctgttctt 51734877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 442
Target Start/End: Complemental strand, 29655642 - 29655571
Alignment:
Q  371 actttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttctt 442  Q
    |||| ||| |||||||||| ||| | ||||||||||||| |||||||||  | ||||||||||| |||||||    
T  29655642 acttcgagatgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcgacctgttctt 29655571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 366 - 432
Target Start/End: Complemental strand, 37245833 - 37245767
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcg 432  Q
    ||||||||| |||||||||||||| ||| | ||| ||||||||| |||||||||  | |||||||||    
T  37245833 ttccaacttcgaggtgaagtttgttaggagacaatcgaacatggttgctcatactttagctagggcg 37245767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 419
Target Start/End: Original strand, 28426389 - 28426442
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatac 419  Q
    ||||||||| |||| ||||||||| ||| | ||||||||||||| |||||||||    
T  28426389 ttccaacttcgaggagaagtttgttaggagacaagcgaacatggttgctcatac 28426442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 419
Target Start/End: Complemental strand, 49119381 - 49119328
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatac 419  Q
    ||||||||| |||| ||||||||| ||| | ||||||||||||| |||||||||    
T  49119381 ttccaacttcgaggagaagtttgttaggagacaagcgaacatggttgctcatac 49119328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 44936063 - 44936011
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcata 418  Q
    ||||||||| |||||||||||||| ||  | ||||||||||||| ||||||||    
T  44936063 ttccaacttcgaggtgaagtttgttagcagacaagcgaacatggttgctcata 44936011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 56065839 - 56065891
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcata 418  Q
    ||||||||| ||| |||||||||| ||| | ||||||||||||| ||||||||    
T  56065839 ttccaacttcgagatgaagtttgttaggagacaagcgaacatggttgctcata 56065891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 1e-46; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 361 - 496
Target Start/End: Original strand, 17975231 - 17975365
Alignment:
Q  361 ttattttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgttt 460  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||| |||||||| || |||||||||||||||||    
T  17975231 ttattttccaaatttgaggtgaagtttgtcaggcgtcaaacgaacatgactgctcatacaattgctagggagacatgtttttggcctagtcgccatgttt 17975330  T
Q  461 ttgagatttgtcctccttatattgaatcttttttaa 496  Q
    |||||||||||||||| | |||||||||||||||||    
T  17975331 ttgagatttgtcctcc-tgtattgaatcttttttaa 17975365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 361 - 483
Target Start/End: Complemental strand, 13076015 - 13075894
Alignment:
Q  361 ttattttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgttt 460  Q
    ||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||| ||| |||||||| ||||||| |||||||||| ||||||||    
T  13076015 ttatttttcaactttgaggtgaagtttgttaggcatcaagcgaacatggctgctcataccatt-ctagggcggcatgttcatagcctagtccccatgttt 13075917  T
Q  461 ttgagatttgtcctccttatatt 483  Q
    |||||||||||||||||| ||||    
T  13075916 ttgagatttgtcctccttgtatt 13075894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 369 - 485
Target Start/End: Complemental strand, 323881 - 323765
Alignment:
Q  369 caactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgtttttgagatt 468  Q
    ||||||||| ||||||||||| || |||||| | ||||| ||| || |||||||||||| |||  ||| ||||| |||||||||| ||||||||||||||    
T  323881 caactttgaagtgaagtttgttagacgtcaatcaaacatagctactaatacgattgctaaggccgcatattcttggcctagtcgctatgtttttgagatt 323782  T
Q  469 tgtcctccttatattga 485  Q
    ||| |||||||||||||    
T  323781 tgttctccttatattga 323765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 361 - 429
Target Start/End: Complemental strand, 23756454 - 23756386
Alignment:
Q  361 ttattttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagg 429  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  23756454 ttatttttcaactttgaagtgaagtttgtcaggcgtcaagcgaacatgactgctcatacgattgttagg 23756386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 366 - 451
Target Start/End: Original strand, 5609545 - 5609630
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtc 451  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| |||||||||  | ||||||||| ||||||||| | ||||||    
T  5609545 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatacattagctagggcggcatgttcttgggctagtc 5609630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 369 - 451
Target Start/End: Original strand, 4395367 - 4395449
Alignment:
Q  369 caactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtc 451  Q
    ||||||||||||||||||||| ||| | ||||||||||||| |||||||||  | ||||||||| | ||||||| | ||||||    
T  4395367 caactttgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggctagtc 4395449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 370 - 462
Target Start/End: Original strand, 24538697 - 24538789
Alignment:
Q  370 aactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgttttt 462  Q
    ||||||||||||||||| || |||   ||||||||||||  |||||||||  |||||||| | |||||||||| | |||||| |||| |||||    
T  24538697 aactttgaggtgaagttcgttaggaaacaagcgaacatgattgctcatacttttgctaggacaacatgttcttcggctagtcaccatattttt 24538789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 51113521 - 51113597
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttctt 442  Q
    ||||||||| |||||||||||||| ||| |  |||||||||||| ||||||||   | ||||||||||| |||||||    
T  51113521 ttccaacttcgaggtgaagtttgttaggagagaagcgaacatggttgctcatagcttagctagggcgacctgttctt 51113597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 419
Target Start/End: Original strand, 44527459 - 44527512
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatac 419  Q
    |||||||||  ||||||||||| | ||| | |||||||||||||||||||||||    
T  44527459 ttccaacttcaaggtgaagtttattaggagacaagcgaacatggctgctcatac 44527512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 419
Target Start/End: Original strand, 44602958 - 44603011
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatac 419  Q
    ||||||||| |||||||||||||| ||| | |||||||||||||  ||||||||    
T  44602958 ttccaacttcgaggtgaagtttgttaggggacaagcgaacatggtggctcatac 44603011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 48949705 - 48949653
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcata 418  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| | ||||||    
T  48949705 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttactcata 48949653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 9e-38; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 361 - 485
Target Start/End: Original strand, 18720840 - 18720964
Alignment:
Q  361 ttattttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgttt 460  Q
    |||| |||||||||||||||||||||||| |||| ||||| | |||||| ||||||||||||||||| |||| ||||||||| ||||| |||||||||||    
T  18720840 ttatcttccaactttgaggtgaagtttgttaggcatcaagtgcacatggttgctcatacgattgctatggcggcatgttcttggcctaatcgccatgttt 18720939  T
Q  461 ttgagatttgtcctccttatattga 485  Q
    |||||||||||||||||| ||||||    
T  18720940 ttgagatttgtcctccttgtattga 18720964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 366 - 496
Target Start/End: Complemental strand, 49525175 - 49525045
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgtttttgag 465  Q
    |||||| |||||||| |||||||| ||||| |||||||||||||||||||| ||  |||||||||||   ||||||| | |||||| |||| ||||||||    
T  49525175 ttccaattttgaggtaaagtttgttaggcgacaagcgaacatggctgctcacacccttgctagggcggtctgttcttggactagtcaccatatttttgag 49525076  T
Q  466 atttgtcctccttatattgaatcttttttaa 496  Q
    ||||||||||||| |||||| ||| ||||||    
T  49525075 atttgtcctccttgtattgactctattttaa 49525045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 366 - 451
Target Start/End: Complemental strand, 34497353 - 34497268
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtc 451  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| ||||||||   | ||||||||| | ||||||| | ||||||    
T  34497353 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatagcttagctagggcggcctgttcttgggctagtc 34497268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 55199717 - 55199769
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcata 418  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| ||||||||    
T  55199717 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcata 55199769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 26046898 - 26046960
Alignment:
Q  370 aactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcg 432  Q
    ||||||||||||| |||||| ||| | ||||||||||||| |||||||||  | |||||||||    
T  26046898 aactttgaggtgacgtttgttaggagacaagcgaacatggttgctcatactttagctagggcg 26046960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 366 - 416
Target Start/End: Complemental strand, 42340258 - 42340208
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctca 416  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| ||||||    
T  42340258 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctca 42340208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 419
Target Start/End: Original strand, 53497238 - 53497291
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatac 419  Q
    |||||||||  ||||||||||| | ||| | |||||||||||||||||||||||    
T  53497238 ttccaacttcaaggtgaagtttattaggagacaagcgaacatggctgctcatac 53497291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 27608884 - 27608832
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcata 418  Q
    ||||||||| ||| |||||||||| ||| | ||||||||||||| ||||||||    
T  27608884 ttccaacttcgagctgaagtttgttaggagacaagcgaacatggttgctcata 27608832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 363 - 496
Target Start/End: Original strand, 22534501 - 22534637
Alignment:
Q  363 attttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgttttt 462  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||||||| ||| ||||| ||  | |||||||||||||    
T  22534501 atttttcaactttgaggtgaagtttgtcaggcatcaagcgaacatggatgttcatacgattgttagggcggcattttcttggctcaatcgccatgttttt 22534600  T
Q  463 gagatttgtcctcctta---tattgaatcttttttaa 496  Q
    |||||||||||||||||   |||||||||||||||||    
T  22534601 gagatttgtcctccttattgtattgaatcttttttaa 22534637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 382 - 478
Target Start/End: Original strand, 5542589 - 5542685
Alignment:
Q  382 aagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgtttttgagatttgtcctcctt 478  Q
    |||||||  ||||| ||||||||||||| |||||||||  ||||||||||| ||| ||||| | |||||| ||||||||||||||||||||||||||    
T  5542589 aagtttgctaggcgacaagcgaacatggttgctcatacacttgctagggcggcatattcttggtctagtcaccatgtttttgagatttgtcctcctt 5542685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 361 - 485
Target Start/End: Original strand, 33792019 - 33792143
Alignment:
Q  361 ttattttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgttt 460  Q
    ||||||||||||||||||||| ||||| | | ||||||| | ||||||| || ||||||||||| |||||||  ||||||||  |||| ||  |||||||    
T  33792019 ttattttccaactttgaggtgcagtttattaagcgtcaaacaaacatggttgttcatacgattgttagggcggtatgttcttgacctaatcatcatgttt 33792118  T
Q  461 ttgagatttgtcctccttatattga 485  Q
    || |||| |||| ||||| ||||||    
T  33792119 tttagatgtgtcgtccttgtattga 33792143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 366 - 419
Target Start/End: Complemental strand, 11731650 - 11731597
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatac 419  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| |||||||||    
T  11731650 ttccaacttcgaggtgaagtttgttaggaggcaagcgaacatggttgctcatac 11731597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 366 - 408
Target Start/End: Original strand, 3100452 - 3100494
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatg 408  Q
    |||||||||||||||||||||||| ||| | ||||||||||||    
T  3100452 ttccaactttgaggtgaagtttgttaggagacaagcgaacatg 3100494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 368 - 418
Target Start/End: Original strand, 27443141 - 27443191
Alignment:
Q  368 ccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcata 418  Q
    |||||||||||||||||||||| ||| |  |||||||||||| ||||||||    
T  27443141 ccaactttgaggtgaagtttgttaggagagaagcgaacatggttgctcata 27443191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 419
Target Start/End: Original strand, 14680368 - 14680421
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatac 419  Q
    ||||||||| |||||||||||||| ||| | || |||||||||| |||||||||    
T  14680368 ttccaacttcgaggtgaagtttgttaggagacatgcgaacatggttgctcatac 14680421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 8e-35; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 361 - 492
Target Start/End: Original strand, 25538098 - 25538229
Alignment:
Q  361 ttattttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgttt 460  Q
    ||||||||||||| ||||||||| ||||| ||||||| ||||||||||| ||||||||| | | ||| |||| ||||||||| |||||||||||||||||    
T  25538098 ttattttccaactctgaggtgaaatttgttaggcgtctagcgaacatggatgctcatacaaattctaaggcggcatgttcttggcctagtcgccatgttt 25538197  T
Q  461 ttgagatttgtcctccttatattgaatctttt 492  Q
    |||||||||| || |||| |||||||||||||    
T  25538198 ttgagatttgccccccttgtattgaatctttt 25538229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 366 - 442
Target Start/End: Complemental strand, 34695885 - 34695809
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttctt 442  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| |||||||||  | ||||||||| | |||||||    
T  34695885 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcttgttctt 34695809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 366 - 442
Target Start/End: Complemental strand, 34718297 - 34718221
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttctt 442  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| |||||||||  | ||||||||| | |||||||    
T  34718297 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcttgttctt 34718221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 366 - 419
Target Start/End: Original strand, 9710161 - 9710214
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatac 419  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| |||||||||    
T  9710161 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatac 9710214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 366 - 439
Target Start/End: Complemental strand, 13109850 - 13109777
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgtt 439  Q
    ||||||| |||||||||||||||||||| | ||| ||||||| | || ||||||  | ||||||||||||||||    
T  13109850 ttccaacgttgaggtgaagtttgtcaggagacaaacgaacatagttgttcatactttagctagggcgacatgtt 13109777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 419
Target Start/End: Complemental strand, 12130619 - 12130566
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatac 419  Q
    ||||||||| |||||||||||||| | | | ||||||||||||| |||||||||    
T  12130619 ttccaacttcgaggtgaagtttgttatgagacaagcgaacatggttgctcatac 12130566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 5e-33; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 361 - 485
Target Start/End: Original strand, 32378146 - 32378269
Alignment:
Q  361 ttattttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgttt 460  Q
    ||||||| ||||||||||||||||||||| ||   |||||||||||||||||||||||||||||||| | || ||||||||| |||||||||||||||||    
T  32378146 ttatttttcaactttgaggtgaagtttgttagaa-tcaagcgaacatggctgctcatacgattgctatgacggcatgttcttggcctagtcgccatgttt 32378244  T
Q  461 ttgagatttgtcctccttatattga 485  Q
    ||||||||| |||||| | ||||||    
T  32378245 ttgagatttttcctccctgtattga 32378269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 366 - 451
Target Start/End: Original strand, 23075038 - 23075123
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtc 451  Q
    |||||||||| ||||||||||||| ||| | ||||||||||||| ||||||||   | |||||| |||||||||||| | ||||||    
T  23075038 ttccaactttaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctaggacgacatgttcttgggctagtc 23075123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 366 - 451
Target Start/End: Complemental strand, 22767254 - 22767169
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtc 451  Q
    ||||||||| |||||||||||||| ||| | ||| ||||||||| |||||||||  | |||| |||| ||||||||| | ||||||    
T  22767254 ttccaacttcgaggtgaagtttgttaggagacaaacgaacatggttgctcatactttagctaaggcggcatgttcttgggctagtc 22767169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 26597438 - 26597386
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcata 418  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| ||||||||    
T  26597438 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcata 26597386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 442
Target Start/End: Complemental strand, 27532887 - 27532811
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttctt 442  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| | || ||||  | ||||||| |||||||||||    
T  27532887 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatggttacttatactttagctagggtgacatgttctt 27532811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 451
Target Start/End: Original strand, 4268305 - 4268390
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtc 451  Q
    |||||||||  ||||||||||| | ||| | ||||||||||||| |||||||||  |  |||||||| ||||||||| | ||||||    
T  4268305 ttccaacttcaaggtgaagtttattaggagacaagcgaacatggttgctcatactttatctagggcggcatgttcttgggctagtc 4268390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 419
Target Start/End: Original strand, 20205161 - 20205214
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatac 419  Q
    |||||||||  ||||||||||||| ||| | ||||||||||||| |||||||||    
T  20205161 ttccaacttctaggtgaagtttgttaggagacaagcgaacatggttgctcatac 20205214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 451
Target Start/End: Original strand, 25731014 - 25731099
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtc 451  Q
    |||||||||  ||||||||||||| ||| |  |||||||||||| |||||||||  | ||||||||| | ||||||| | ||||||    
T  25731014 ttccaacttccaggtgaagtttgttaggagataagcgaacatggttgctcatactttagctagggcggcctgttcttgggctagtc 25731099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 451
Target Start/End: Original strand, 27292640 - 27292724
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtc 451  Q
    |||||||||  | ||||||||| ||||| | ||||||||||||| |||||||||  | ||||||| ||||||||||| | ||||||    
T  27292640 ttccaacttcaaagtgaagtttatcaggagacaagcgaacatggttgctcatactttagctaggg-gacatgttcttgggctagtc 27292724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 8388292 - 8388344
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcata 418  Q
    ||||||||| |||| ||||||||| ||| | ||||||||||||| ||||||||    
T  8388292 ttccaacttcgaggggaagtttgttaggagacaagcgaacatggttgctcata 8388344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 368 - 485
Target Start/End: Original strand, 13329 - 13444
Alignment:
Q  368 ccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgtttttgagat 467  Q
    ||||||||||||| |||||||| || || |||||||||||||||||||  ||  ||||||||||| | ||||||| | |||||| || ||| ||||||||    
T  13329 ccaactttgaggtaaagtttgttagacgacaagcgaacatggctgctc--actcttgctagggcggcctgttcttgggctagtcaccgtgtctttgagat 13426  T
Q  468 ttgtcctccttatattga 485  Q
    ||||||||||| ||||||    
T  13427 ttgtcctccttgtattga 13444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 58 - 153
Target Start/End: Complemental strand, 12326361 - 12326266
Alignment:
Q  58 actccttgtattggtttgaaaccaaatggttttgtttctgaggcttctagagaaagtggtgttgttatcataaacagcttggctcttgttgaaact 153  Q
    |||||||| |||||||||||||| |||||||||||||||||||| || || |||| ||||  ||| ||||| || |||||||| ||||||||||||    
T  12326361 actccttgcattggtttgaaacctaatggttttgtttctgaggcctcaagggaaactggtactgtcatcatcaatagcttggcccttgttgaaact 12326266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 368 - 496
Target Start/End: Complemental strand, 8670293 - 8670165
Alignment:
Q  368 ccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtcgccatgtttttgagat 467  Q
    ||||||||||||| |||||||| ||||| ||| | ||||||| |||||| ||  || |||||||| | ||||||| | |||||| || | | ||||||||    
T  8670293 ccaactttgaggtaaagtttgttaggcgacaaacaaacatggttgctcacactcttactagggcggcctgttcttggactagtcaccgtatctttgagat 8670194  T
Q  468 ttgtcctccttatattgaatcttttttaa 496  Q
    ||||| ||||| |||||| ||| ||||||    
T  8670193 ttgtcttccttgtattgactctattttaa 8670165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 442
Target Start/End: Complemental strand, 478037 - 477961
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttctt 442  Q
    |||||||||  ||||||||||||| ||| | ||||||||||||| |||||||||  | ||||||||| | |||||||    
T  478037 ttccaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcataccttagctagggcgtcctgttctt 477961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 370 - 442
Target Start/End: Original strand, 11870474 - 11870546
Alignment:
Q  370 aactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttctt 442  Q
    ||||| |||||||||||||| ||| | ||||||||||||| |||||||||  | |||||||| || |||||||    
T  11870474 aacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcaacctgttctt 11870546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 366 - 432
Target Start/End: Original strand, 7127429 - 7127495
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcg 432  Q
    |||||||||||| ||||||||||| ||| | ||||||||||||  |||||||||  | |||||||||    
T  7127429 ttccaactttgatgtgaagtttgttaggagacaagcgaacatgattgctcatactttagctagggcg 7127495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 451
Target Start/End: Complemental strand, 40588711 - 40588626
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcatacgattgctagggcgacatgttcttagcctagtc 451  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||  ||| |||||  | ||||||||| | ||||||| | ||||||    
T  40588711 ttccaacttcgaggtgaagtttgttaggagacaagcgaacatgattgcacatactttagctagggcggcctgttcttgggctagtc 40588626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 368 - 418
Target Start/End: Complemental strand, 44220 - 44170
Alignment:
Q  368 ccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcata 418  Q
    |||||||||||||||||||||| ||| |  |||||||||||| ||||||||    
T  44220 ccaactttgaggtgaagtttgttaggagagaagcgaacatggttgctcata 44170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 396 - 448
Alignment:
Q  366 ttccaactttgaggtgaagtttgtcaggcgtcaagcgaacatggctgctcata 418  Q
    ||||||||| ||| |||||||||| ||| | ||||||||||||| ||||||||    
T  396 ttccaacttcgagatgaagtttgttaggagacaagcgaacatggttgctcata 448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University