View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4780_low_11 (Length: 435)
Name: NF4780_low_11
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 20 - 418
Target Start/End: Complemental strand, 39084538 - 39084140
Alignment:
| Q |
20 |
gcagcatcacagaatttggtatatgcagaaaaggatctaagttacacctaagatacacacatgcaaatgcaattaaacaagaaccatactcattaacata |
119 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39084538 |
gcagcattacagaatttggtatatgcagaaaaggatctaagttacacctaagatacacacatgcaaatgcaattaaacaagaaccatactcattaacata |
39084439 |
T |
|
| Q |
120 |
atttctacacataataatacccaacattaatccacaatatttatttaactactaaccaaaactaaaataactataccactaaaaactcttgaggaacaac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39084438 |
atttctacacataataatacccaacattaatccacaatatttatttaactactaaccaaaactaaaataactataccactaaaaactcttgaggaacaac |
39084339 |
T |
|
| Q |
220 |
caatgagtatgttttttctcaatattcttctccttaatagtatccaagctaggcttccaccctttccctgaaatctgcctattcaaataatctggtctcc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39084338 |
caatgagtatgttttttctcaatattcttctccttaatagtatccaagctaggcttccaccctttccctgaaatctgcctattcaaataatctggtctcc |
39084239 |
T |
|
| Q |
320 |
cttccattatttccggcaaattctccgaaaaatcatgtctctctcccttctcctccatcacctcttcctttctctgaggctccacaatttcactgttat |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39084238 |
cttccattatttccggcaaattctccgaaaaatcatgtctctctcccttctcctccatcacctcttcctttctctgaggttccacaatttcactgttat |
39084140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 44729752 - 44729815
Alignment:
| Q |
244 |
ttcttctccttaatagtatccaagctaggcttccaccctttccctgaaatctgcctattcaaat |
307 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||| | |||||| |||||| |
|
|
| T |
44729752 |
ttcttttccttaattgtatccaagctaggcttccaccctttccctgataattgcctactcaaat |
44729815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University