View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_low_13 (Length: 417)
Name: NF4780_low_13
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 11183744 - 11184141
Alignment:
| Q |
1 |
agtaattatttttgtcctttgctttattcatggagttggagctaactatctctttaagcaaagaatgcttggaatacagggacattctacccacccaata |
100 |
Q |
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| T |
11183744 |
agtaattatttttgtcctttgctttattcatggagttggagctaactatctctttaagcaaagaatgcttggaatacagggacattctacccacctaata |
11183843 |
T |
|
| Q |
101 |
taaaatactacaatatcttttagtaacacttctcaccaagccacacaacaatctttcctttttctttccgagtctcaaaaatgtttattccatatgtcac |
200 |
Q |
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| T |
11183844 |
taaaatactacaatatcttttagtaacacttctcaccaagccacagaacaatctttcctttttctttccgagtctcaaaaatgtttattccatatgtcaa |
11183943 |
T |
|
| Q |
201 |
aatctttagagttgtactttagctaaagaggttttaatcacctgatcatgttaatgaagaaagcacggtcaagggacaagttaaagctattcactctcct |
300 |
Q |
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| T |
11183944 |
actctttggagttgtactttagctaaagaggttttaatcacctgatcatgttaatgaagaaagcatggtcaagggacaagttaaagctattcactctcct |
11184043 |
T |
|
| Q |
301 |
catcttggtttggttttcaagagagtttaaaaacatatcccacactttagttagacttagatcattgttacttttatcacatttgtttgtctttgtct |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11184044 |
catcttggtttggttttcaagagagtttaaaaacatatcccacactatagttagacttagatcattgttactttgatcacatttgtttgtctttgtct |
11184141 |
T |
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