View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_low_15 (Length: 401)
Name: NF4780_low_15
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 22653102 - 22652884
Alignment:
| Q |
4 |
aatatgtggatggaatttgatcttgtaaaatctagggttggtttggctcacgtacgatgtgattttgtgtgtcaaaaagtattgggttttgtgtagttag |
103 |
Q |
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| T |
22653102 |
aatatgtggatggaatttgatcttgtaaaatctagggttggtttggctcacgtacgatgtgatatggtgggtcaaaaagtattgggttttgtgtagttag |
22653003 |
T |
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| Q |
104 |
acccacatgttgtattggaaggttgcttaatagatacttcaagttgttcaatctatcaggatgtaattttttatcgttgatttgtgcgtaaagcatgatg |
203 |
Q |
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| T |
22653002 |
acccacatgttatattggacggttacttaatagatccttcaaattgctcaatcgatcaggttgtaattttttatcgttgttttgtgcgtaaagcatgatg |
22652903 |
T |
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| Q |
204 |
aaatcataaatctcaatga |
222 |
Q |
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| T |
22652902 |
aaatcataattctcaatga |
22652884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 232 - 396
Target Start/End: Complemental strand, 22652844 - 22652680
Alignment:
| Q |
232 |
aacaacgatgattgtattgaggtatggtccaattaaagcttattcaaatttctgaagttgtggtccattcccttcgtgcgattttaatgaggggcctctt |
331 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22652844 |
aacaacaatgattttattgaggtatggtccaattaaagcttattcaaatttctgaagttgtggtccattcccttcgtgcgattttaatgaggggcctctt |
22652745 |
T |
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| Q |
332 |
ggtagaaatcaactttgaagaaggctgtcaggaacttaaaatcaacaatcagtctcttggttcat |
396 |
Q |
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| T |
22652744 |
ggtagaaatcaactttggacaaggctgtcaggaacttaaaatcaacaatcagtctcttggttcat |
22652680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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