View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_low_20 (Length: 375)
Name: NF4780_low_20
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_low_20 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 28608432 - 28608071
Alignment:
| Q |
1 |
tgaacacatgctagaatcctaagctctgcatcaagtctgagcttttgtatagtctttagcttgttttgctcatatctctttttgggcttgtatatgacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28608432 |
tgaacacatgctagaatcctaagctctgcatcaagtctgagcttttgtatagtctttagcttgttttgctcatatctctttttgggcttgtatatgacat |
28608333 |
T |
|
| Q |
101 |
ttatgatgggagctaccactatagtcattaaaataactgctgatgttaaaacaacataggttggtggagtaataatctgaaatgacacattataacaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28608332 |
ttatgatgggagctaccactatagtcattaaaataactgctgatgttaaaacaacataggttggtggagtaataatctgaaatgacacattataacaaat |
28608233 |
T |
|
| Q |
201 |
caaaaattaaacatttataattttgaagtgtgagttattaaaaaaggtagtaaataataattttcaagtagatcaataccattctatcccatgaaatgtt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28608232 |
caaaaattaaacatttataattttgaagtgtgagttattaaaaaagggagtaaataataattttcaagtagatcaataccattctatcccatgaaatgtt |
28608133 |
T |
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| Q |
301 |
gagcattattaatgcaacgacaccctttgtattgagaagcaagcctaaagcaaaaccatctc |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28608132 |
gagcattattaatgcaacgacaccctttgtattgagaagcaagcctaaagcaaaaccatctc |
28608071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 361
Target Start/End: Original strand, 7589432 - 7589511
Alignment:
| Q |
282 |
ttctatcccatgaaatgttgagcattattaatgcaacgacaccctttgtattgagaagcaagcctaaagcaaaaccatct |
361 |
Q |
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| T |
7589432 |
ttctatcccaatcaatgttgagcattatcaacgcagcgacacctttagtattaagaagcaagtctaaagcaaaaccatct |
7589511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 438472 - 438831
Alignment:
| Q |
1 |
tgaacacatgctagaatcctaagctctgcatcaagtctgagcttttgtatagtctttagcttgttttgctcatatctctttttgggcttgtatatgacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || | |||| |||||||| |||||||||||||| ||| |
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| T |
438472 |
tgaacacatgctagaatcctaagctctgcatcaagtctaagcttttgtatagtctttagcttattattctcaaatctctttctgggcttgtatatggcat |
438571 |
T |
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| Q |
101 |
ttatgatgggagctaccactatagtcattaaaataactgctgatgttaaaacaacataggttggtggagtaataatctgaaatgacacattataacaaat |
200 |
Q |
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| |||| ||||| |||||||||||||||| || |||||| || ||||||||| |||| |||||||||| || ||||| || |||||| || ||||| |
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| T |
438572 |
tgatgacaggagccaccactatagtcattagaagaactgcagaggttaaaacagcatatgttggtggagaaagaatctacaaatacacat--tagcaaat |
438669 |
T |
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| Q |
201 |
caaaaattaaac-atttataattttgaagtgtgagttattaaaaaaggtagtaaataataattttcaagtagatcaataccattctatcccatgaaatgt |
299 |
Q |
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|||| ||| ||| ||||||||||||| || | |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||| | |
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| T |
438670 |
caaagattgaactttttataattttgacgttagcgttattaaaaaagggagtaaataataattttcaagtagatcaataccgatctatcccaggaaatat |
438769 |
T |
|
| Q |
300 |
tgagcattattaatgcaacgacaccctttgtattgagaagcaagcctaaagcaaaaccatct |
361 |
Q |
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| T |
438770 |
tgagcattatcagtgcaacgacacccttggtattgagaagcaagcctagagcaaaaccatct |
438831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 13659803 - 13659600
Alignment:
| Q |
1 |
tgaacacatgctagaatcctaagctctgcatcaagtctgagcttttgtatagtctttagcttgttttgctcatatctctttttgggcttgtatatgacat |
100 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||| | ||||| |||||||||| |
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| T |
13659803 |
tgaacacatgtaagaatcctaagctctgcatcaagtctaagcttttgtatagtctttagcttgttctgctcaaatctctttctcggcttatatatgacat |
13659704 |
T |
|
| Q |
101 |
ttatgatgggagctaccactatagtcattaaaataactgctgatgttaaaacaacataggttggtggagtaataatctgaaatgacacattataacaaat |
200 |
Q |
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| || |||||| ||||||||||||||||||| ||||| | ||||||||| ||| ||| ||||||| || |||||| |||||||||||||||||||| |
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| T |
13659703 |
tgattgtgggaggcaccactatagtcattaaaagtactgcagcagttaaaacagcatgggtgggtggagaaagaatctgcaatgacacattataacaaat |
13659604 |
T |
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| Q |
201 |
caaa |
204 |
Q |
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|||| |
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| T |
13659603 |
caaa |
13659600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 13652303 - 13652060
Alignment:
| Q |
1 |
tgaacacatgctagaatcctaagctctgcatcaagtctgagcttttgtatagtctttagcttgttttgctcatatctctttttgggcttgtatatgacat |
100 |
Q |
| |
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|||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| ||||||| ||||| ||| |
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| T |
13652303 |
tgaacacatgttagaatcctaagttctgcatcaagtctaagcttttgtatagtctttagcttgttctgctcaaatctcttcctgggcttatatatcgcat |
13652204 |
T |
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| Q |
101 |
ttatgatgggagctaccactatagtcattaaaataactgctgatgttaaaacaacataggttggtggagtaataatctgaaatgacacattataacaaat |
200 |
Q |
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| || | | ||| ||||| ||||||||||||| || || | | ||||||| ||| || ||| || || |||||| ||||| | |||||||||||| |
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| T |
13652203 |
taataacgagaggaaccacaatagtcattaaaaagaccgcagccgataaaacagcatgagtgggttcagaaaaaatctgcaatgagaaattataacaaat |
13652104 |
T |
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| Q |
201 |
caaaaattaaacatttataattttgaagtgtgagttattaaaaa |
244 |
Q |
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||||| ||||| |||||||||||| ||||| |||||||| |
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| T |
13652103 |
caaaatttaaattgatataattttgaatcttgagtaattaaaaa |
13652060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 13652025 - 13651966
Alignment:
| Q |
297 |
tgttgagcattattaatgcaacgacaccctttgtattgagaagcaagcctaaagcaaaac |
356 |
Q |
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||||||||||||| ||||||| | ||||||| |||||||||| || ||||| |||||||| |
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| T |
13652025 |
tgttgagcattatcaatgcaagggcacccttagtattgagaatcatgcctagagcaaaac |
13651966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 338
Target Start/End: Complemental strand, 13659536 - 13659470
Alignment:
| Q |
272 |
atcaataccattctatcccatgaaatgttgagcattattaatgcaacgacaccctttgtattgagaa |
338 |
Q |
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|||||||| |||||||||| || ||||||||||||| | ||||| | |||||||||||||||||| |
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| T |
13659536 |
atcaatacttttctatcccaagatgtgttgagcattatcagtgcaagggcaccctttgtattgagaa |
13659470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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