View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4780_low_30 (Length: 343)

Name: NF4780_low_30
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4780_low_30
NF4780_low_30
[»] chr2 (4 HSPs)
chr2 (1-243)||(41847029-41847269)
chr2 (246-290)||(31204215-31204260)
chr2 (246-290)||(31184494-31184538)
chr2 (246-285)||(31173381-31173421)
[»] chr5 (3 HSPs)
chr5 (244-286)||(27808554-27808597)
chr5 (245-290)||(11822238-11822284)
chr5 (245-290)||(27809799-27809845)
[»] chr8 (3 HSPs)
chr8 (245-290)||(23231336-23231382)
chr8 (246-290)||(45120759-45120804)
chr8 (245-290)||(17443371-17443417)
[»] chr1 (1 HSPs)
chr1 (246-285)||(18883847-18883887)
[»] chr6 (1 HSPs)
chr6 (245-290)||(31860743-31860789)
[»] chr4 (2 HSPs)
chr4 (245-290)||(1593859-1593905)
chr4 (245-290)||(2333859-2333905)
[»] chr3 (2 HSPs)
chr3 (245-290)||(51545240-51545286)
chr3 (246-285)||(24398591-24398631)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 41847029 - 41847269
Alignment:
Q  1 atatatgaatgagatgtttaattaaagattgttaaaagttctgatgggaatgagatatttagctaacgatagctaaaaggaattgattagcacttctaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41847029 atatatgaatgagatgtttaattaaagattgttaaaagttctgatgggaatgagatatttagctaaagatagctaaaaggaattgattagcacttctaat 41847128  T
Q  101 accaacaaaatgcaccnnnnnnnnncttcaagagttcataatttaaaagcttaagtctgagaaatgatttcctgagaagtttatgaagaagcaaatgagt 200  Q
    |||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41847129 accaacaaaatgcacatttttgtttcttcaagagttcataatttaaaagcttaagtctgagaaatgatttcctgagaagtttacgaagaagcaaatgagt 41847228  T
Q  201 caagataaaatctgctgaaaagtgatttgtggggttatttatc 243  Q
     ||||| ||||||||||||||||||||||| ||||||||||||    
T  41847229 gaagat-aaatctgctgaaaagtgatttgt-gggttatttatc 41847269  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 31204260 - 31204215
Alignment:
Q  246 gaaaattg-ttttctgacatacaaaagttcacaatgacacaagtaa 290  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  31204260 gaaaattgcttttctgacatacaaaagttcacaatgacacaagtaa 31204215  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 31184538 - 31184494
Alignment:
Q  246 gaaaattgttttctgacatacaaaagttcacaatgacacaagtaa 290  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||    
T  31184538 gaaaattgctttttgacatacaaaagttcacaatgacacaagtaa 31184494  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 285
Target Start/End: Original strand, 31173381 - 31173421
Alignment:
Q  246 gaaaattg-ttttctgacatacaaaagttcacaatgacaca 285  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  31173381 gaaaattgcttttctgacatacaaaagttcacaatgacaca 31173421  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 286
Target Start/End: Original strand, 27808554 - 27808597
Alignment:
Q  244 gagaaaattg-ttttctgacatacaaaagttcacaatgacacaa 286  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  27808554 gagaaaattgcttttctgacatacaaaagttcacaatgacacaa 27808597  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 11822284 - 11822238
Alignment:
Q  245 agaaaattg-ttttctgacatacaaaagttcacaatgacacaagtaa 290  Q
    ||||||||| |||||||||||| |||| |||||||||||||||||||    
T  11822284 agaaaattgcttttctgacatagaaaacttcacaatgacacaagtaa 11822238  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 27809845 - 27809799
Alignment:
Q  245 agaaaattg-ttttctgacatacaaaagttcacaatgacacaagtaa 290  Q
    ||||||||| |||||| |||||||||||| |||||||||||||||||    
T  27809845 agaaaattgattttctcacatacaaaagtacacaatgacacaagtaa 27809799  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 23231382 - 23231336
Alignment:
Q  245 agaaaattgtttt-ctgacatacaaaagttcacaatgacacaagtaa 290  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  23231382 agaaaattgtttttctgacatagaaaagttcacaatgacacaagtaa 23231336  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 45120804 - 45120759
Alignment:
Q  246 gaaaattg-ttttctgacatacaaaagttcacaatgacacaagtaa 290  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||    
T  45120804 gaaaattgcttttctgacatagaaaagttcacaatgacacaagtaa 45120759  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 17443417 - 17443371
Alignment:
Q  245 agaaaattgtttt-ctgacatacaaaagttcacaatgacacaagtaa 290  Q
    ||||||||||||| |||||||| |||| |||||||||||||||||||    
T  17443417 agaaaattgtttttctgacatagaaaacttcacaatgacacaagtaa 17443371  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 285
Target Start/End: Original strand, 18883847 - 18883887
Alignment:
Q  246 gaaaattg-ttttctgacatacaaaagttcacaatgacaca 285  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  18883847 gaaaattgcttttctgacatacaaaagttcacaatgacaca 18883887  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 31860789 - 31860743
Alignment:
Q  245 agaaaattg-ttttctgacatacaaaagttcacaatgacacaagtaa 290  Q
    ||||||||| |||||||||||| |||| |||||||||||||||||||    
T  31860789 agaaaattgcttttctgacatagaaaacttcacaatgacacaagtaa 31860743  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 1593905 - 1593859
Alignment:
Q  245 agaaaattg-ttttctgacatacaaaagttcacaatgacacaagtaa 290  Q
    ||||||||| |||||||||||| |||| |||||||||||||||||||    
T  1593905 agaaaattgcttttctgacatagaaaacttcacaatgacacaagtaa 1593859  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 2333905 - 2333859
Alignment:
Q  245 agaaaattg-ttttctgacatacaaaagttcacaatgacacaagtaa 290  Q
    ||||||||| |||||||||||| |||| |||||||||||||||||||    
T  2333905 agaaaattgcttttctgacataaaaaacttcacaatgacacaagtaa 2333859  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 51545240 - 51545286
Alignment:
Q  245 agaaaattg-ttttctgacatacaaaagttcacaatgacacaagtaa 290  Q
    ||||||||| |||||||||||| |||| |||||||||||||||||||    
T  51545240 agaaaattgcttttctgacatagaaaacttcacaatgacacaagtaa 51545286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 285
Target Start/End: Complemental strand, 24398631 - 24398591
Alignment:
Q  246 gaaaattg-ttttctgacatacaaaagttcacaatgacaca 285  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  24398631 gaaaattgcttttctaacatacaaaagttcacaatgacaca 24398591  T

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