View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_low_31 (Length: 335)
Name: NF4780_low_31
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 18965971 - 18966280
Alignment:
| Q |
18 |
ataacttgtgcaattagttttctttctttcttttgaggaaatgtataagaaattctcttccacatgtcattaattcctacatttaaaaaatcaacacatt |
117 |
Q |
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| T |
18965971 |
ataacttgtgcaattagttttctgtatttcttttgaggaaatgtataagcaattctcttccacatgtcattaattcctacatt-aaaaaatcaatacatt |
18966069 |
T |
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| Q |
118 |
cgggtcttacgccttcattttcgttcataacctctttcttttacagtttatcaaagccactcaataatattcctaatagatgtaaaagttggaagcaaga |
217 |
Q |
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| T |
18966070 |
cgggtattacgccttcattttcgttcataacctctttcttttacagtttatcaaagccacttaataatattcctaatacatgtaaaagttggaagcaaga |
18966169 |
T |
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| Q |
218 |
tag---catattagcaaatatgcttctagcctctaccgttaatacaattgaactcaacgagatatgattttttggtgttgttataaatccttgatacttt |
314 |
Q |
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| T |
18966170 |
tggatatatattagcaaatatgcttctagcctctaccgttaatacaattgaactcaacgagaagtgatttttt-attttgttataaatccttgatacttt |
18966268 |
T |
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| Q |
315 |
gttgggctcatt |
326 |
Q |
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| T |
18966269 |
gttgggctcatt |
18966280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 14075629 - 14075591
Alignment:
| Q |
61 |
tataagaaattctcttccacatgtcattaattcctacat |
99 |
Q |
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| T |
14075629 |
tataagcaattcacttccacatgtcattaattcctacat |
14075591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 14385657 - 14385619
Alignment:
| Q |
61 |
tataagaaattctcttccacatgtcattaattcctacat |
99 |
Q |
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| T |
14385657 |
tataagcaattcacttccacatgtcattaattcctacat |
14385619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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