View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4780_low_34 (Length: 321)
Name: NF4780_low_34
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_low_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 6 - 311
Target Start/End: Original strand, 9677824 - 9678135
Alignment:
| Q |
6 |
aaaatgaaggtttccgccgttaaaacggaggtttcaggttccggtgaagattccggcgatgagtttattaatctatcttctcctacttctgttctccggt |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
9677824 |
aaaatgaaggtttccgccgttaaaacggaggtttcaggttccggtgaagattccggcgatgagtttattaatctatcttctcctacttcagtactccggt |
9677923 |
T |
|
| Q |
106 |
tcagaaatgaagaaattggtgaaccggtgaaaatggttgaaccggctaatg------aagatgaacctgttgaagtagaaccgtttggtgagtgtgaagg |
199 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9677924 |
tcagaaatgaggaaattggtgaaccggtgaaaatagttgaaccggttaatgaaaatgaagatgaaccggttgaagtagaaccgtttggtgagtgtgaagg |
9678023 |
T |
|
| Q |
200 |
tgaaacgaggtttttcgacgaaactaatgatattttccgacaagacatggttgaagtgttcaattatccaacaacatgtgattattcacttatgtttgat |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
9678024 |
tgaaacgaggtttttcgacgaaactaatgatattttccgacaagacatggatgaagtgttcaattttcctacaacatgtgattattcacttatgtttgat |
9678123 |
T |
|
| Q |
300 |
gaagatcctatg |
311 |
Q |
| |
|
|||||||||||| |
|
|
| T |
9678124 |
gaagatcctatg |
9678135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University