View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4780_low_40 (Length: 298)
Name: NF4780_low_40
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_low_40 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 37917643 - 37917823
Alignment:
| Q |
12 |
attctgcgtatgtttcggttttcatcgcgttggcgagtgaaggaacggatgtgagagcgctttttgaactcacgcttgttgatcagagcggtcaggggaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37917643 |
attctgcgtatgtttcggttttcatcgcgttggcgagtgaaggaacggatgtgagagcgctttttgaactcacgcttgttgatcagagtggtcaggggaa |
37917742 |
T |
|
| Q |
112 |
gcataaggttcatagccattttgatcgctctcttgaaagtggtccttataccttgaaatataagggtagcatgtggtaggg |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37917743 |
gcataaggttcatagccattttgatcgctctcttgaaagtggtccttataccttgaaatataagggtagcatgtggtaggg |
37917823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 232 - 282
Target Start/End: Original strand, 37917863 - 37917913
Alignment:
| Q |
232 |
atgttgatcatagtgtgggaatttcgttgtttgaatttgatgtgagttttg |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37917863 |
atgttgatcatagtgtgggaatttcgttgtttgaatttgatgtgagttttg |
37917913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 33578744 - 33578899
Alignment:
| Q |
7 |
agattattctgcgtatgtttcggttttcatcgcgttggcgagtgaaggaacggatgtgagagcgctttttgaactcacgcttgttgatcagagcggtcag |
106 |
Q |
| |
|
|||| ||||||| |||||||| |||||||| || | || |||||| || ||||| ||||| |||||||||||||| | |||||||||| | | |
|
|
| T |
33578744 |
agataattctgcttatgtttctgttttcattgctctcgcttctgaaggtaccgatgttagagctctttttgaactcactttgcttgatcagagtcctaat |
33578843 |
T |
|
| Q |
107 |
gggaagcataaggttcatagccattttgatcgctctcttgaaagtggtccttatac |
162 |
Q |
| |
|
| || |||||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
33578844 |
tgcaaacataaggttcatagtcattttgatcgctctcttgagagtggtccttatac |
33578899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 37609703 - 37609762
Alignment:
| Q |
112 |
gcataaggttcatagccattttgatcgctctcttgaaagtggtccttataccttgaaata |
171 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| |
|
|
| T |
37609703 |
gcataaggttcatagccattttgagaggactcttgaaagtggaccttataccttgaaata |
37609762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 32265218 - 32265100
Alignment:
| Q |
18 |
cgtatgtttcggttttcatcgcgttggcgagtgaaggaacggatgtgagagcgctttttgaactcacgcttgttgatcagagcggtcaggggaagcataa |
117 |
Q |
| |
|
||||||| ||| ||||||||||| | ||||||||||| || ||||| || |||||||||||| | |||||| | |||||||| || | | || |||||| |
|
|
| T |
32265218 |
cgtatgtgtcgcttttcatcgcgcttgcgagtgaagggactgatgttagggcgctttttgaattaacgcttttggatcagagtgggaaagagaggcataa |
32265119 |
T |
|
| Q |
118 |
ggttcatagccattttgat |
136 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
32265118 |
ggttcatagtcattttgat |
32265100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 1988594 - 1988706
Alignment:
| Q |
22 |
tgtttcggttttcatcgcgttggcgagtgaaggaacggatgtgagagcgctttttgaactcacgcttgttgatcagagcggtcaggggaagcataaggtt |
121 |
Q |
| |
|
|||||| |||| | || |||||| |||||||| || |||| |||||| | |||||||||| |||| |||||||||| ||| | |||||||||||||| |
|
|
| T |
1988594 |
tgtttctgtttacgtcacgttggagagtgaagttactaatgttagagcgttgtttgaactcaagcttcttgatcagagtggtaaagggaagcataaggtc |
1988693 |
T |
|
| Q |
122 |
catagccattttg |
134 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1988694 |
catagccattttg |
1988706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University