View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_low_41 (Length: 297)
Name: NF4780_low_41
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 30800966 - 30801227
Alignment:
| Q |
19 |
aaaagttgtgaccatccaatatcagtgactcttttagagaacaaataaaaaagattgcatataaaaaatattccatttatatttatatatgactaataag |
118 |
Q |
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| T |
30800966 |
aaaagttgtgaccatccaatatcagtgactcttttagagaacaaataaaaaagattgcatataaaaaatattccatttatatttatatatgactaataag |
30801065 |
T |
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| Q |
119 |
cgtacctgcagctggtagcctacatttatgatgaaggcatgaggacgagcctcaagagcaatccactttccatccttcaatacttgaagaccagatacat |
218 |
Q |
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| T |
30801066 |
cgtacctgcagctggtagcctacatttatgatgaaggcatgaggacgagcctcaagagcaatccactttccatccttcaatacttgaagaccagatacat |
30801165 |
T |
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| Q |
219 |
catcttgcattaaaatagtgatgaggtttggatcagagtgtttactcattcccattgccaaa |
280 |
Q |
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| T |
30801166 |
catcttgcattaaaatagtgatgaggtttggatcagagtgtttactcattcccagtgccaaa |
30801227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 113 - 261
Target Start/End: Original strand, 30808487 - 30808635
Alignment:
| Q |
113 |
aataagcgtacctgcagctggtagcctacatttatgatgaaggcatgaggacgagcctcaagagcaatccactttccatccttcaatacttgaagaccag |
212 |
Q |
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| T |
30808487 |
aataagtgtacctgcaattggtagcctacgttgatgacaaaagcatgaggaagagcctcaacagcgatccactctccatccttgaatacttgaagaccag |
30808586 |
T |
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| Q |
213 |
atacatcatcttgcattaaaatagtgatgaggtttggatcagagtgttt |
261 |
Q |
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| T |
30808587 |
atacatcgtcttgcagtaaaatggtgatgaggttaggatctgagtgttt |
30808635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 170 - 270
Target Start/End: Original strand, 30793401 - 30793501
Alignment:
| Q |
170 |
tcaagagcaatccactttccatccttcaatacttgaagaccagatacatcatcttgcattaaaatagtgatgaggtttggatcagagtgtttactcattc |
269 |
Q |
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| T |
30793401 |
tcaagagcgatccactctccatccttcaatacttgaagaccacatacatcatcttgcattaaaatggtaataagatttggatctgaaagtttgctcattc |
30793500 |
T |
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| Q |
270 |
c |
270 |
Q |
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| T |
30793501 |
c |
30793501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 30783551 - 30783617
Alignment:
| Q |
179 |
atccactttccatccttcaatacttgaagaccagatacatcatcttgcattaaaatagtgatgaggt |
245 |
Q |
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| T |
30783551 |
atccactttccatcctttaatacttgaagaccacttacatcatcttgcattaaaatggtgatgaggt |
30783617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 30740243 - 30740309
Alignment:
| Q |
179 |
atccactttccatccttcaatacttgaagaccagatacatcatcttgcattaaaatagtgatgaggt |
245 |
Q |
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| T |
30740243 |
atccaatttccatcttttaatacttgaaggccacttacatcatcttgcattaaaatggtgatgaggt |
30740309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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