View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4780_low_42 (Length: 295)

Name: NF4780_low_42
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4780_low_42
NF4780_low_42
[»] chr4 (1 HSPs)
chr4 (13-280)||(18925844-18926111)
[»] chr7 (15 HSPs)
chr7 (55-276)||(4712181-4712402)
chr7 (48-260)||(4697312-4697524)
chr7 (14-242)||(4666662-4666890)
chr7 (20-275)||(4653259-4653508)
chr7 (46-246)||(4672435-4672635)
chr7 (59-245)||(4630699-4630885)
chr7 (135-276)||(4846121-4846262)
chr7 (55-245)||(4783972-4784162)
chr7 (55-260)||(4863690-4863895)
chr7 (137-245)||(4643521-4643629)
chr7 (46-96)||(4643445-4643495)
chr7 (55-245)||(4816401-4816591)
chr7 (202-245)||(4636772-4636815)
chr7 (188-234)||(4662892-4662938)
chr7 (13-102)||(4661539-4661628)


Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 18926111 - 18925844
Alignment:
Q  13 tgagatagatcattggattttgatattgatcctgcgagattgttatttttgtcacttattttcaaaatctcgatcccattcaatgtgacattacgttatt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18926111 tgagatagatcattggattttgatattgatcctgcgagattgttatttttgtcacttattttcaaaatctcgatcccattcaatgtgacattacggtatt 18926012  T
Q  113 ttgagtagatattttctggtgctcgttgtagctttattgaaagattaactcttttaattttagagcttccttctcgagagtacatagtcacaacataatc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  18926011 ttgagtagatattttctggtgctcgttgtagctttattgaaagattaactcttttaatttgcgagcttccttctcgagagtacatagtcacaacataatc 18925912  T
Q  213 cttatgaacaggaatcatacgagcaccactccaatgaatcacatcagcatttcgttcagccaaattat 280  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18925911 cttatgaacaggaaccatacgagcaccactccaatgaatcacatcagcatttcgttcagccaaattat 18925844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 55 - 276
Target Start/End: Complemental strand, 4712402 - 4712181
Alignment:
Q  55 ttatttttgtcacttattttcaaaatctcgatcccattcaatgtgacattacgttattttgagtagatattttctggtgctcgttgtagctttattgaaa 154  Q
    |||||||| ||||||||||| |||||||| || ||||||| | |||||| ||| || |||| ||||||| |||||||| ||||||| ||||| |||||||    
T  4712402 ttatttttatcacttattttgaaaatctcaattccattcattatgacatcacggtaatttgtgtagatactttctggttctcgttgaagcttaattgaaa 4712303  T
Q  155 gattaactcttttaattttagagcttccttctcgagagtacatagtcacaacataatccttatgaacaggaatcatacgagcaccactccaatgaatcac 254  Q
    | |||||||||| ||||| ||||||||| | | ||||||||||  ||||| |||||||||||||||||||||||||   | |||||||||| | ||||||    
T  4712302 ggttaactctttcaatttcagagcttccattttgagagtacattttcacagcataatccttatgaacaggaatcatgttaccaccactccagtaaatcac 4712203  T
Q  255 atcagcatttcgttcagccaaa 276  Q
    |||||| | | |||||||||||    
T  4712202 atcagcgtattgttcagccaaa 4712181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 48 - 260
Target Start/End: Complemental strand, 4697524 - 4697312
Alignment:
Q  48 gagattgttatttttgtcacttattttcaaaatctcgatcccattcaatgtgacattacgttattttgagtagatattttctggtgctcgttgtagcttt 147  Q
    |||||| | |||||| ||| ||||||||||||||||||| |||||||||||||||| ||  ||| ||| | |||||  | |||||||||||||||||||     
T  4697524 gagattatcatttttatcatttattttcaaaatctcgatgccattcaatgtgacatcaccgtatcttgtgaagatacgtcctggtgctcgttgtagcttg 4697425  T
Q  148 attgaaagattaactcttttaattttagagcttccttctcgagagtacatagtcacaacataatccttatgaacaggaatcatacgagcaccactccaat 247  Q
    ||||||||||||| ||||| ||||| ||||||||||||| |||||| ||||| |||| ||||||| ||||||||||||| |||| ||| |  |||||||     
T  4697424 attgaaagattaagtctttcaatttgagagcttccttcttgagagtgcatagacacagcataatctttatgaacaggaaccataggagtagtactccaag 4697325  T
Q  248 gaatcacatcagc 260  Q
     ||||||||||||    
T  4697324 aaatcacatcagc 4697312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 4666662 - 4666890
Alignment:
Q  14 gagatagatcattggattttgatattgatcctgcgagattgttatttttgtcacttattttcaaaatctcgatcccattcaatgtgacattacgttattt 113  Q
    |||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |    ||||| ||  |||||    
T  4666662 gagatagaacaatggattttgatattggtcctgcgagattgttatttttgtcacttatttttaaaatctcgattccattaagaaggacatcactgtattt 4666761  T
Q  114 tgagtagatattttctggtgctcgttgtagctttattgaaagattaactcttttaattttagagcttccttctcgagagtacatagtcacaacataatcc 213  Q
    ||   ||| | |||||||| ||||||| ||||| ||||||||||||||||||| ||||| |  ||| ||| || |||| | ||||||||   ||||||||    
T  4666762 tgtaaagacagtttctggtactcgttgaagcttaattgaaagattaactctttcaatttgacggctccctccttgagaatccatagtcaaggcataatcc 4666861  T
Q  214 ttatgaacaggaatcatacgagcaccact 242  Q
    ||||||||||||| ||||||| |||||||    
T  4666862 ttatgaacaggaaccatacgaacaccact 4666890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 275
Target Start/End: Original strand, 4653259 - 4653508
Alignment:
Q  20 gatcattggattttgatattgatcctgcgagattgttatttttgtcacttattttcaaaatctcgatcccattcaatgtgacattacgttattttgagta 119  Q
    ||||| ||||||||| ||||||||||||||||||||  || | |||||||  ||| ||||||| ||| ||||||||| ||||||  || ||||||| ||     
T  4653259 gatcaatggattttgttattgatcctgcgagattgtcgttgtagtcactttcttttaaaatctggattccattcaatatgacatcgcggtattttgtgtg 4653358  T
Q  120 gatattttctggtgctcgttgtagctttattgaaagattaactcttttaattttagagcttccttctcgagagtacatagtcacaacataatccttatga 219  Q
    | || ||      ||||  |||||||| |||| |||||||||||||| ||||| || ||||||||||  ||||| |||||||||||||||||||||||||    
T  4653359 gttagtt------gctctctgtagcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacaacataatccttatga 4653452  T
Q  220 acaggaatcatacgagcaccactccaatgaatcacatcagcatttcgttcagccaa 275  Q
    |||||||||| |||||||   |||||   |||||||||||||||| ||||||||||    
T  4653453 acaggaatcaaacgagcattgctccatgaaatcacatcagcatttggttcagccaa 4653508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 46 - 246
Target Start/End: Original strand, 4672435 - 4672635
Alignment:
Q  46 gcgagattgttatttttgtcacttattttcaaaatctcgatcccattcaatgtgacattacgttattttgagtagatattttctggtgctcgttgtagct 145  Q
    |||||||| |||||||| ||||||| ||| ||||||||||| ||||| |||||||||| ||  | ||||| |||| |  | | || |  | |||| ||||    
T  4672435 gcgagattattatttttatcacttactttgaaaatctcgattccatttaatgtgacatcactgtcttttgtgtagttcatatttgttagtggttgaagct 4672534  T
Q  146 ttattgaaagattaactcttttaattttagagcttccttctcgagagtacatagtcacaacataatccttatgaacaggaatcatacgagcaccactcca 245  Q
    | || |||||||||||||||| ||||| ||||||||||||| ||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||    
T  4672535 taatagaaagattaactctttcaatttgagagcttccttcttgagagtacatagtgacagcataatccttatgaacaggaaccatacgagcaccactcca 4672634  T
Q  246 a 246  Q
    |    
T  4672635 a 4672635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 59 - 245
Target Start/End: Original strand, 4630699 - 4630885
Alignment:
Q  59 ttttgtcacttattttcaaaatctcgatcccattcaatgtgacattacgttattttgagtagatattttctggtgctcgttgtagctttattgaaagatt 158  Q
    |||| ||||||||||| |||||||| || |||||||    ||||| ||| ||| ||| ||  ||| |||||||||||||| | ||||| |||||||||||    
T  4630699 ttttatcacttattttgaaaatctcaattccattcagcaggacatcacgatatattgtgtgtatagtttctggtgctcgtcgaagcttgattgaaagatt 4630798  T
Q  159 aactcttttaattttagagcttccttctcgagagtacatagtcacaacataatccttatgaacaggaatcatacgagcaccactcca 245  Q
    |||||||| ||||| ||||||||||||| |||||||||||  |||||||||||||||||||  ||||| ||||||||||||||||||    
T  4630799 aactctttcaatttgagagcttccttcttgagagtacataagcacaacataatccttatgagtaggaaccatacgagcaccactcca 4630885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 135 - 276
Target Start/End: Complemental strand, 4846262 - 4846121
Alignment:
Q  135 tcgttgtagctttattgaaagattaactcttttaattttagagcttccttctcgagagtacatagtcacaacataatccttatgaacaggaatcatacga 234  Q
    |||||| ||||| ||||||||||||||||||| ||||| ||||||||| | | ||||||| ||  ||||| |||||||||||||||||||||||||   |    
T  4846262 tcgttgaagcttgattgaaagattaactctttcaatttcagagcttccattttgagagtagattttcacagcataatccttatgaacaggaatcatgtta 4846163  T
Q  235 gcaccactccaatgaatcacatcagcatttcgttcagccaaa 276  Q
     |||||||||||  |||||||||||||| | |||||||||||    
T  4846162 ccaccactccaaaaaatcacatcagcatatagttcagccaaa 4846121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 55 - 245
Target Start/End: Complemental strand, 4784162 - 4783972
Alignment:
Q  55 ttatttttgtcacttattttcaaaatctcgatcccattcaatgtgacattacgttattttgagtagatattttctggtgctcgttgtagctttattgaaa 154  Q
    |||||||| |||||||||||||||||||| || |||||||| ||||||| ||| |||   |     |||  || ||||  |||||||||||| || ||||    
T  4784162 ttatttttatcacttattttcaaaatctcaattccattcaacgtgacatcacgatataccgtaggcataggttttggtaatcgttgtagcttgatcgaaa 4784063  T
Q  155 gattaactcttttaattttagagcttccttctcgagagtacatagtcacaacataatccttatgaacaggaatcatacgagcaccactcca 245  Q
    |||||||| ||| ||||| |||||||||  || ||||   |||||||||  ||||||||||||||||||||| || | |||||||||||||    
T  4784062 gattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaaccaaaggagcaccactcca 4783972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 260
Target Start/End: Original strand, 4863690 - 4863895
Alignment:
Q  55 ttatttttgtcacttattttcaaaatctcgatcccattcaatgtgacattacgttattttgagtagatattttctggtgctcgttgtagctttattgaaa 154  Q
    |||||||| || |||||||| ||||||||||| |||||||| || |||| ||| |||||||   | ||  | | ||||  | |||||| ||| |  ||||    
T  4863690 ttatttttatcgcttattttaaaaatctcgattccattcaacgtaacatcacggtattttgtaaacatggtctttggtaattgttgtaacttgagcgaaa 4863789  T
Q  155 gattaactcttttaattttagagcttccttctcgagagtacatagtcacaacataatccttatgaacaggaatcatacgagcaccactccaatgaatcac 254  Q
    | |||||||||| ||||| |||||||||||||  |||||  |||| ||||  |||||||||||||||||||| |||||||| ||| |||||  | |||||    
T  4863790 ggttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatccttatgaacaggaaccatacgagaaccgctccaccgtatcac 4863889  T
Q  255 atcagc 260  Q
    ||||||    
T  4863890 atcagc 4863895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 137 - 245
Target Start/End: Original strand, 4643521 - 4643629
Alignment:
Q  137 gttgtagctttattgaaagattaactcttttaattttagagcttccttctcgagagtacatagtcacaacataatccttatgaacaggaatcatacgagc 236  Q
    |||| ||||| |||||||||||| |||||| || || ||||||||||||| || ||| ||||| ||   ||||||||||||||||||||| || ||||||    
T  4643521 gttgaagcttgattgaaagattagctctttcaagttgagagcttccttcttgatagtccatagacattgcataatccttatgaacaggaaccaaacgagc 4643620  T
Q  237 accactcca 245  Q
    |||||||||    
T  4643621 accactcca 4643629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 4643445 - 4643495
Alignment:
Q  46 gcgagattgttatttttgtcacttattttcaaaatctcgatcccattcaat 96  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  4643445 gcgagattgttatttttgtcacttatttttaaaatctcgattccattcaat 4643495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 245
Target Start/End: Complemental strand, 4816591 - 4816401
Alignment:
Q  55 ttatttttgtcacttattttcaaaatctcgatcccattcaatgtgacattacgttattttgagtagatattttctggtgctcgttgtagctttattgaaa 154  Q
    |||||||| |||||||||||||||||||| || |||||||| ||||||| ||| |||   ||    |||  || ||||  ||| |||||||| || ||||    
T  4816591 ttatttttatcacttattttcaaaatctcaattccattcaacgtgacatcacgatataccgaaggcataggttttggtaatcgatgtagcttgatcgaaa 4816492  T
Q  155 gattaactcttttaattttagagcttccttctcgagagtacatagtcacaacataatccttatgaacaggaatcatacgagcaccactcca 245  Q
    |||||||| ||| ||||| |||||||||  |  ||||   |||||||||  |||||||||||||||||||||  | | |||||||||||||    
T  4816491 gattaactttttcaatttgagagcttccgccatgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagcaccactcca 4816401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 245
Target Start/End: Original strand, 4636772 - 4636815
Alignment:
Q  202 acaacataatccttatgaacaggaatcatacgagcaccactcca 245  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  4636772 acaacataatccttatgaacaggaaccatacgagcaccactcca 4636815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 4662892 - 4662938
Alignment:
Q  188 gagagtacatagtcacaacataatccttatgaacaggaatcatacga 234  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||    
T  4662892 gagagtacatagtcacaccataatccttatgaacaggaaccatacga 4662938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 4661539 - 4661628
Alignment:
Q  13 tgagatagatcattggattttgatattgatcctgcgagattgttatttttgtcacttattttcaaaatctcgatcccattcaatgtgaca 102  Q
    |||||||||| | |||||||||||| || || || |||||| | ||||| ||||||||| || |||||||| || ||||||||| |||||    
T  4661539 tgagatagataaatggattttgataatgctcttgtgagattttgattttcgtcacttatatttaaaatctcaattccattcaatatgaca 4661628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University