View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_low_43 (Length: 295)
Name: NF4780_low_43
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 285
Target Start/End: Complemental strand, 29819640 - 29819372
Alignment:
| Q |
17 |
agaaggatgtatttcttgatattgcatgtttcttcaagggaatgaagatagataaagtaatagatatattagaaaattgtggttatttccccaaaattat |
116 |
Q |
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| T |
29819640 |
agaaggatgtatttcttgatattgcgtgtttcttcaagggaatgaagatagataaagtaatagatatattagaaaattgtggttatttccccaaaattat |
29819541 |
T |
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| Q |
117 |
aattcaagttttgattgacagatctttgataactctagatcgggtcaataataaattggggatgcatgatttgcttcaagaaatgggcaggaatattgta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29819540 |
aattcaagttttgattgacagatctttgataactctagatcgggtcaataataaattggggatgcatgatttgcttcaagaaatgggcaggaatattgta |
29819441 |
T |
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| Q |
217 |
tttcaggaatctccaaatgatcctggcagatgtagcaggttatggtctaaagaggacatcgattctgtg |
285 |
Q |
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| T |
29819440 |
tttcaggaatctccaaatgatcctggcagatgtagcaggttatggtctaaagaggacatcgattctgtg |
29819372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 17 - 275
Target Start/End: Complemental strand, 29827883 - 29827625
Alignment:
| Q |
17 |
agaaggatgtatttcttgatattgcatgtttcttcaagggaatgaagatagataaagtaatagatatattagaaaattgtggttatttccccaaaattat |
116 |
Q |
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| T |
29827883 |
agaagaatatatttctagatatttcctgtttcttcaagggaatgaagagagataaagtaataaatatattagaaaattgtggatatcaccccgaaattac |
29827784 |
T |
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| Q |
117 |
aattcaagttttgattgacagatctttgataactctagatcgggtcaataataaattggggatgcatgatttgcttcaagaaatgggcaggaatattgta |
216 |
Q |
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| T |
29827783 |
aattcaagttttgatagacagatctttgataactctagatcgtgtcaataataaactggggatgcatgatttgcttcaagaaatgggaaggaatattgta |
29827684 |
T |
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| Q |
217 |
tttcaggaatctccaaatgatcctggcagatgtagcaggttatggtctaaagaggacat |
275 |
Q |
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| T |
29827683 |
attcaggaatctccaaatgatccaggcaaacgtagcagattatggtctaaagaagacat |
29827625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 17 - 275
Target Start/End: Original strand, 29572392 - 29572650
Alignment:
| Q |
17 |
agaaggatgtatttcttgatattgcatgtttcttcaagggaatgaagatagataaagtaatagatatattagaaaattgtggttatttccccaaaattat |
116 |
Q |
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|||||||| | ||||| |||||||| |||||||| |||||||||||| ||||||||| |||||||||||||||| |||||| |||||||| ||||| |
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| T |
29572392 |
agaaggatatttttctagatattgcttgtttctttaagggaatgaagggagataaagttatagatatattagaaagttgtggctatttccctcaaattgg |
29572491 |
T |
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| Q |
117 |
aattcaagttttgattgacagatctttgataactctagatcgggtcaataataaattggggatgcatgatttgcttcaagaaatgggcaggaatattgta |
216 |
Q |
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||||||| |||||||||| ||||| ||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
29572492 |
aattcaaattttgattgaaagatcattgataactctagattctgtgaataataaattgggaatgcatgatttgcttcaagaaatgggcagggatattgta |
29572591 |
T |
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| Q |
217 |
tttcaggaatctccaaatgatcctggcagatgtagcaggttatggtctaaagaggacat |
275 |
Q |
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|||||||||||||||||||||||| | ||| |||||||||| |||||| |||||||||| |
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| T |
29572592 |
tttcaggaatctccaaatgatccttgtagacgtagcaggttgtggtctcaagaggacat |
29572650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 35686356 - 35686399
Alignment:
| Q |
172 |
ttggggatgcatgatttgcttcaagaaatgggcaggaatattgt |
215 |
Q |
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| T |
35686356 |
ttggggatgcatgatttgcttcaagaaatgggtagaaatattgt |
35686399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 28 - 264
Target Start/End: Complemental strand, 11123847 - 11123611
Alignment:
| Q |
28 |
tttcttgatattgcatgtttcttcaagggaatgaagatagataaagtaatagatatattagaaaattgtggttatttccccaaaattataattcaagttt |
127 |
Q |
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||||| |||||||||||||||||||| |||||| | |||||| |||||||||| || |||||| |||||||||| ||||||||| |||| | ||| |
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| T |
11123847 |
tttctagatattgcatgtttcttcaaaggaatggacatagatgaagtaatagaaattttagaaggttgtggttatcatcccaaaattggaattgacattt |
11123748 |
T |
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| Q |
128 |
tgattgacagatctttgataactctagatcgggtcaataataaattggggatgcatgatttgcttcaagaaatgggcaggaatattgtatttcaggaatc |
227 |
Q |
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| T |
11123747 |
tgattgaaagatctttggcaactttggataggggggacaataagttgtggatgcatgatttgcttcaagaaatgggaaggaatattgtgtttgaagaatc |
11123648 |
T |
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| Q |
228 |
tccaaatgatcctggcagatgtagcaggttatggtct |
264 |
Q |
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| T |
11123647 |
tccaaatgatcctggaaaacgcagtaggttatggtct |
11123611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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