View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_low_44 (Length: 294)
Name: NF4780_low_44
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 292
Target Start/End: Original strand, 55329834 - 55330115
Alignment:
| Q |
11 |
cacagagtatgctgacatccaatagaaattcagtatattgattttatttacaaattattgtaacaaaatggacttagaatttctggttggcctaatcgaa |
110 |
Q |
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| T |
55329834 |
cacagagtatactgacatccaatagaaattcagtatattgattttatttacaaattattgtaacaaaatggacttagaatttctggttggcctaaccgaa |
55329933 |
T |
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| Q |
111 |
tcccaaaaaattgacttttgaggtgaaaattactcccagttttaaaaacttgttcatgtcatcttttaatcaatgtaggactctttaccacatcctctca |
210 |
Q |
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|||||||||||| | ||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
55329934 |
tcccaaaaaatttatttttgagctgaaaattactctcagttttaaacacttgttcatgtcatcttttaatcaatgtaggactctttaacacatcctctca |
55330033 |
T |
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| Q |
211 |
cgccaacaatattgaactaaatgcgtggatataaatggtggatgatctagtagcaggtagatattatcctacattataattt |
292 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| || |||| ||||||||| |
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| T |
55330034 |
cgtcaacaatattgaactaaatgcgtggatataaatggtggatgatctagtaacaggtagctatgatactacgttataattt |
55330115 |
T |
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