View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_low_45 (Length: 292)
Name: NF4780_low_45
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 88 - 278
Target Start/End: Complemental strand, 40129797 - 40129607
Alignment:
| Q |
88 |
agtgtgctaaatatatttccatttttgaagtggaaactgatttgcaagctggagctaaccacggatatgaggtaaaacaattagacaacaaactgcgtca |
187 |
Q |
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| T |
40129797 |
agtgagctaaatatatttccatttttgaagtggaaactgatttgcaagctggagctaaccacggatatgaggtaaaacaattagataacaaactacgtca |
40129698 |
T |
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| Q |
188 |
aaaataattataatgatatatttaagtgaaataatattaattgaaatacaatgtttctgatgtattcagctgttgtggatcatacttattg |
278 |
Q |
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| T |
40129697 |
aaaataattataatgatatatttaagtgaaataatattaattgaaatacaatgttcctgatgtattcagctgttgtggatcatacttattg |
40129607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 40140774 - 40140722
Alignment:
| Q |
116 |
agtggaaactgatttgcaagctggagctaaccacggatatgaggtaaaacaat |
168 |
Q |
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| T |
40140774 |
agtggaaactgatttgcaagctggagctaatcacggatacgaggtaaaacaat |
40140722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 31828849 - 31828913
Alignment:
| Q |
108 |
atttttgaagtggaaactgatttgcaagctggagctaaccacggatatgaggtaaaacaattaga |
172 |
Q |
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| T |
31828849 |
atttttgtagtggaaaccgatttgcaggccggagctaaccacaaatatgaggtaaagcatttaga |
31828913 |
T |
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