View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4780_low_47 (Length: 291)
Name: NF4780_low_47
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_low_47 |
 | |
|
| [»] scaffold0343 (1 HSPs) |
| | |
|
| [»] scaffold0113 (1 HSPs) |
| | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 129; Significance: 8e-67; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 97 - 253
Target Start/End: Original strand, 1281563 - 1281719
Alignment:
| Q |
97 |
agaatgtcaacactacaacttaaaatgaataccatctattagtacaaatataaacttaaggaaaacatttacaagatttaacttaatcgataaaaatact |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1281563 |
agaatgtcaacactacaacttaaaatgaataccatctattagtgcatatataaacttaaggaaaacatttacaagatttaacttaacggataaaaatact |
1281662 |
T |
|
| Q |
197 |
gaaattgttaggtcggacattgtgagtggggattaaaggtttcaaacttcatattct |
253 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||| |
|
|
| T |
1281663 |
gaaattgttaggtcggacattatgagtgggaattaaaggtttcaaacctcatattct |
1281719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 1280430 - 1280523
Alignment:
| Q |
3 |
aatacaaaatgtcacaaaaatcatagaaaattgttctaaaactcctctaaattagatcagaacataaagaaaatgtctaaacgtaaaatgacct |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1280430 |
aatacaaaatgtcacaaaaatcatagaaaattattctaaaactcctctaaattagatcagaacataaagaaaatgtctaaacgtaaaatgacct |
1280523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 9787012 - 9786956
Alignment:
| Q |
5 |
tacaaaatgtcacaaaaatcatagaaaattgttctaaaactcctctaaattagatca |
61 |
Q |
| |
|
|||||||| |||| |||||||||| |||||||| ||||||||||||||||| ||||| |
|
|
| T |
9787012 |
tacaaaatttcacgaaaatcataggaaattgttttaaaactcctctaaattggatca |
9786956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0343 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0343
Description:
Target: scaffold0343; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 13590 - 13656
Alignment:
| Q |
17 |
caaaaatcatagaaaattgttctaaaactcctctaaattagatcagaacataaagaaaatgtctaaa |
83 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||| ||||| ||| |||| |||||| ||||| |
|
|
| T |
13590 |
caaaaatcatagacaattgttctaaaactccttaaaattggatcaaaacctaaataaaatgactaaa |
13656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 26047248 - 26047204
Alignment:
| Q |
17 |
caaaaatcatagaaaattgttctaaaactcctctaaattagatca |
61 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
26047248 |
caaaaatcataggcaattgttctaaaactcctctaaattggatca |
26047204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 26052429 - 26052385
Alignment:
| Q |
17 |
caaaaatcatagaaaattgttctaaaactcctctaaattagatca |
61 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
26052429 |
caaaaatcataggcaattgttctaaaactcctctaaattggatca |
26052385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 9740023 - 9739979
Alignment:
| Q |
17 |
caaaaatcatagaaaattgttctaaaactcctctaaattagatca |
61 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
9740023 |
caaaaatcatatgcaattgttctaaaactcctctaatttagatca |
9739979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 32415945 - 32415902
Alignment:
| Q |
5 |
tacaaaatgtcacaaaaatcatagaaaattgttctaaaactcct |
48 |
Q |
| |
|
||||||||||| |||||| ||||| ||||||||||||||||||| |
|
|
| T |
32415945 |
tacaaaatgtcccaaaaaccataggaaattgttctaaaactcct |
32415902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 28280264 - 28280310
Alignment:
| Q |
5 |
tacaaaatgtcacaaaaatcatagaaaattgttctaaaactcctcta |
51 |
Q |
| |
|
||||||||||| |||||| |||||| ||||||||||| ||||||||| |
|
|
| T |
28280264 |
tacaaaatgtcccaaaaaccatagacaattgttctaatactcctcta |
28280310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 39132964 - 39132917
Alignment:
| Q |
174 |
ttaacttaatcgataaaaatactgaaattgttaggtcggacattgtga |
221 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
39132964 |
ttaacttaattaataaaaatactgaaattgttagatcggacactgtga |
39132917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0113 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0113
Description:
Target: scaffold0113; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 6632 - 6690
Alignment:
| Q |
19 |
aaaatcatagaaaattgttctaaaactcctctaaattagatcagaacataaagaaaatg |
77 |
Q |
| |
|
||||||||| | |||||||| |||||||||||| ||||||||| ||| |||| |||||| |
|
|
| T |
6632 |
aaaatcatatacaattgttccaaaactcctctatattagatcaaaacctaaataaaatg |
6690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 64060 - 64007
Alignment:
| Q |
8 |
aaaatgtcacaaaaatcatagaaaattgttctaaaactcctctaaattagatca |
61 |
Q |
| |
|
|||||||| |||||| || ||| |||||||||||||||||||||| || ||||| |
|
|
| T |
64060 |
aaaatgtcccaaaaaccaaagacaattgttctaaaactcctctaatttggatca |
64007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 1298674 - 1298706
Alignment:
| Q |
20 |
aaatcatagaaaattgttctaaaactcctctaa |
52 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
1298674 |
aaatcatagacaattgttctaaaactcctctaa |
1298706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University