View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_low_50 (Length: 285)
Name: NF4780_low_50
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 39491261 - 39491530
Alignment:
| Q |
1 |
aaaggatgctgcttatgaattaccaaaagagtttttgaaagagactgaagggagaggtttggttgtgaaatggtgtgcacaggagaaggtgttaatgcac |
100 |
Q |
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| T |
39491261 |
aaaggatgctgcttatgaattaccaaaagagtttttgaaagagactgaagggagaggtttggttgtgaaatggtgtgcacaggagaaggtgttaatgcac |
39491360 |
T |
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| Q |
101 |
cctgctgttgcttgttttctaagtcattgtggttggaactcaacacttgagacattgataactggtgtgcctgttattggttggccatcttggactgacc |
200 |
Q |
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| T |
39491361 |
cctgctgttgcttgttttctaagtcattgtggttggaactcaacacttgagacattgataactggtgtgcctgttattggttggccatcttggactgacc |
39491460 |
T |
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| Q |
201 |
aaccaacaaatgctatgcttattcagaatgtgtttaggaatggtgtaaaagtgaaatatggggaagatgg |
270 |
Q |
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| T |
39491461 |
aaccaacaaatgctatgcttattcagaatgtgtttaggaatggtgtaaaagtgaaatatggggaagatgg |
39491530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 39287774 - 39287505
Alignment:
| Q |
1 |
aaaggatgctgcttatgaattaccaaaagagtttttgaaagagactgaagggagaggtttggttgtgaaatggtgtgcacaggagaaggtgttaatgcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39287774 |
aaaggatgctgcttatgaattaccaaaagagtttttgaaagagactgaagggagaggtttggttgtgaaatggtgtgcacaggagaaggtgttaatgcac |
39287675 |
T |
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| Q |
101 |
cctgctgttgcttgttttctaagtcattgtggttggaactcaacacttgagacattgataactggtgtgcctgttattggttggccatcttggactgacc |
200 |
Q |
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| T |
39287674 |
cctgctgttgcttgttttctaagtcattgtggttggaactcaacacttgagacattgataactggtgtgcctgttatttgctggccttcttggcttgatc |
39287575 |
T |
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| Q |
201 |
aaccaacaaatgctatgcttattcagaatgtgtttaggaatggtgtaaaagtgaaatatggggaagatgg |
270 |
Q |
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| T |
39287574 |
aaccaacaaatgcaatgcttattgagaatgtgtttaggaatggggtgaaagtgaattatggggaagatgg |
39287505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 5906115 - 5905995
Alignment:
| Q |
17 |
gaattaccaaaagagtttttgaaagagactgaagggagaggtttggttgtgaaatggtgtgcacaggagaaggtgttaatgcaccctgctgttgcttgtt |
116 |
Q |
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||||| ||||||| ||||||| |||| || |||| |||||||||||||| | ||||||| || |||||||| |||| |||||||| || ||||||| |
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| T |
5906115 |
gaatttccaaaagggtttttggaagaaacaaaaggaagaggtttggttgtaacatggtgtaatcaagagaaggttttaagccaccctgcagtggcttgtt |
5906016 |
T |
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| Q |
117 |
ttctaagtcattgtggttgga |
137 |
Q |
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|| | |||||||||||||| |
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| T |
5906015 |
ttttgtctcattgtggttgga |
5905995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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