View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_low_53 (Length: 267)
Name: NF4780_low_53
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_low_53 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: scaffold0425 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 248
Target Start/End: Complemental strand, 11512 - 11276
Alignment:
| Q |
12 |
acagacaatcagcgtaaacagaataaaaaagatggctcataaagtcagaatatggtgtatgacaatttgttgcagaacactttgaaacatagtttcagaa |
111 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11512 |
acagacaatcagcgtaaacagaataataaagatggctcataaagtcagaatatggtgtatgacaatttgttgcagaacactttgaaacatagtttcagaa |
11413 |
T |
|
| Q |
112 |
gacctttataaaagtaagtgaaatatgtttcattataatgcttgaatacaaaccatgaaaaaattggaatggatggaattcaaacaatgtcagcctcttc |
211 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11412 |
gacctttataaaagtaagtgaaatatttttcattataatgcttgaatacaaaccatgaacaaattggaatggatggaattcaaacaatgtcagcctcttc |
11313 |
T |
|
| Q |
212 |
ccttgcccgcacatgatcacgaggctctacgtcgagt |
248 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
11312 |
ccttgcccgcacatgatcacgaggctctacgtcgagt |
11276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 248
Target Start/End: Complemental strand, 6526805 - 6526569
Alignment:
| Q |
12 |
acagacaatcagcgtaaacagaataaaaaagatggctcataaagtcagaatatggtgtatgacaatttgttgcagaacactttgaaacatagtttcagaa |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6526805 |
acagacaatcagcgtaaacagaataaaaaagatggctcataaagtcagaatatggtgtatgacaatttgttgcagaacactttgaaacatagttttagaa |
6526706 |
T |
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| Q |
112 |
gacctttataaaagtaagtgaaatatgtttcattataatgcttgaatacaaaccatgaaaaaattggaatggatggaattcaaacaatgtcagcctcttc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6526705 |
gacctttataaaagtaagtgaaatatgtttcattataatgcttgaatacaaaccatgaacaaattggaatggatggaattcaaacaatgtcagcctcttc |
6526606 |
T |
|
| Q |
212 |
ccttgcccgcacatgatcacgaggctctacgtcgagt |
248 |
Q |
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|||||||| |||||||||||||||||||||||||||| |
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| T |
6526605 |
ccttgcccacacatgatcacgaggctctacgtcgagt |
6526569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 248
Target Start/End: Complemental strand, 6848385 - 6848149
Alignment:
| Q |
12 |
acagacaatcagcgtaaacagaataaaaaagatggctcataaagtcagaatatggtgtatgacaatttgttgcagaacactttgaaacatagtttcagaa |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6848385 |
acagacaatcagcgtaaacagaataaaaaagatggctcataaagtcagaacatggtgtatgacaatttgttgcagaacactttgaaacatagtttcagaa |
6848286 |
T |
|
| Q |
112 |
gacctttataaaagtaagtgaaatatgtttcattataatgcttgaatacaaaccatgaaaaaattggaatggatggaattcaaacaatgtcagcctcttc |
211 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6848285 |
gacctttataaaagtaagtgaaatatatttcattataatgcttgaatacaaaccatgaacaaattggaatggatggaattcaaacaatgtcagcctcttc |
6848186 |
T |
|
| Q |
212 |
ccttgcccgcacatgatcacgaggctctacgtcgagt |
248 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
6848185 |
ccttgcccgcacatgatcacgaggctctacgtcgagt |
6848149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 6558051 - 6557825
Alignment:
| Q |
12 |
acagacaatcagcgtaaacagaataaaaaagatggctcataaagtcagaatatggtgtatgacaatttgttgcagaacactttgaaacatagtttcagaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
6558051 |
acagacaatcagcgtaaacagaataaaaaagatgggccataaagtcagattatggtgtatgtcaatttgttgcagacagctttgaaacatagtttcagaa |
6557952 |
T |
|
| Q |
112 |
gacctttataaaagtaagtgaaatatgtttcattataatgcttgaatacaaaccatgaaaaaattggaatggatggaattcaaacaatgtcagcctcttc |
211 |
Q |
| |
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||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| |
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|
| T |
6557951 |
gacacttataaaagtaagtgaaacatgtttcattataatgcttgaatacaaaccatgaacaaattggaatggatggaattcacacaatgtcagactcttc |
6557852 |
T |
|
| Q |
212 |
ccttgcccgcacatgatcacgaggctcta |
240 |
Q |
| |
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|||| || |||||||||| ||||||||| |
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| T |
6557851 |
cctt--ccacacatgatcatgaggctcta |
6557825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 49 - 219
Target Start/End: Complemental strand, 6788821 - 6788647
Alignment:
| Q |
49 |
cataaagtcagaatatggtgtatgacaatttgttgcagaacactttgaaacata----gtttcagaagacctttataaaagtaagtgaaatatgtttcat |
144 |
Q |
| |
|
|||||||| |||||||| ||||||| |||||||||| | | ||||||||||| ||||||||| | |||||||||||||||||||||||||||||| |
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|
| T |
6788821 |
cataaagttagaatatgttgtatgaatatttgttgcatacaaatttgaaacatatatagtttcagaataactttataaaagtaagtgaaatatgtttcat |
6788722 |
T |
|
| Q |
145 |
tataatgcttgaatacaaaccatgaaaaaattggaatggatggaattcaaacaatgtcagcctcttcccttgccc |
219 |
Q |
| |
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|||||||||||||||||||||||||| |||| | |||||||| |||||| ||||||||||||||||||||||||| |
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| T |
6788721 |
tataatgcttgaatacaaaccatgaacaaatcgcaatggatgaaattcacacaatgtcagcctcttcccttgccc |
6788647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 73 - 240
Target Start/End: Complemental strand, 6549487 - 6549319
Alignment:
| Q |
73 |
acaatttgttgcagaacactttgaaacatagtttcag-aagacctttataaaagtaagtgaaatatgtttcattataatgcttgaatacaaaccatgaaa |
171 |
Q |
| |
|
||||||||||||| | | |||||||||||||||||| || ||||||||||| |||| |||||||||||| |||||||||||||||||||||||||| | |
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|
| T |
6549487 |
acaatttgttgcaaataaatttgaaacatagtttcagtaaaacctttataaatgtaaatgaaatatgttttattataatgcttgaatacaaaccatgtac |
6549388 |
T |
|
| Q |
172 |
aaattggaatggatggaattcaaacaatgtcagcctcttcccttgcccgcacatgatcacgaggctcta |
240 |
Q |
| |
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|||||||||| |||||||| || ||||| |||||||| ||||||||| |||||||||||||||||||| |
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| T |
6549387 |
aaattggaatagatggaatccacacaatttcagcctcatcccttgcctccacatgatcacgaggctcta |
6549319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 8467998 - 8468044
Alignment:
| Q |
121 |
aaaagtaagtgaaatatgtttcattataatgcttgaatacaaaccat |
167 |
Q |
| |
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|||||| ||||||| ||||||| |||||||||||||||||||||||| |
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|
| T |
8467998 |
aaaagttagtgaaacatgtttctttataatgcttgaatacaaaccat |
8468044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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