View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_low_55 (Length: 262)
Name: NF4780_low_55
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 26156999 - 26157181
Alignment:
| Q |
19 |
tttatcctccctcctctatacgctttacagattgtcttttatttcttaatcatgcctacattattgnnnnnnn-gtctctaatacagtggtagactaaaa |
117 |
Q |
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| T |
26156999 |
tttatcctccctcctctatacgctttacagattgtcttttatttcttaatcatgcctacattattgttttttttgtctctaatacagtggtagactaaca |
26157098 |
T |
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| Q |
118 |
attaaccagttctttgtaattgcctgacagtcctccatcatatccagttaaagtccgagtaagttatcaaaaattgctcaagt |
200 |
Q |
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| T |
26157099 |
attaaccagttctttgtaattgcccgacagtcctccatcatatccagttaaagtccgagtaagttatcaaaaattgctcaagt |
26157181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 26170297 - 26170479
Alignment:
| Q |
19 |
tttatcctccctcctctatacgctttacagattgtcttttatttcttaatcatgcctacattattgnnnnnnn-gtctctaatacagtggtagactaaaa |
117 |
Q |
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| T |
26170297 |
tttatcctccctcctctatacgctttacagattgtcttttatttcttaatcatgcctacattattgttttttttgtctctaatacagtggtagactaaca |
26170396 |
T |
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| Q |
118 |
attaaccagttctttgtaattgcctgacagtcctccatcatatccagttaaagtccgagtaagttatcaaaaattgctcaagt |
200 |
Q |
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| T |
26170397 |
attaaccagttctttgtaattgcccgacagtcctccatcatatccagttaaagtccgagtaagttatcaaaaattgctcaagt |
26170479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 107 - 200
Target Start/End: Complemental strand, 44784385 - 44784292
Alignment:
| Q |
107 |
gtagactaaaaattaaccagttctttgtaattgcctgacagtcctccatcatatccagttaaagtccgagtaagttatcaaaaattgctcaagt |
200 |
Q |
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| T |
44784385 |
gtagactgacaattaaccatttctttctaattgtccaacagtcctccttcatatccagttaaagtccgagttagttatcaaaaattgctcaagt |
44784292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 44784470 - 44784421
Alignment:
| Q |
31 |
cctctatacgctttacagattgtcttttatttcttaatcatgcctacatt |
80 |
Q |
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| T |
44784470 |
cctctatacgctttagagattgtcttttatttgtcaatcatgcctacatt |
44784421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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