View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_low_6 (Length: 471)
Name: NF4780_low_6
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_low_6 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 141 - 463
Target Start/End: Complemental strand, 28608051 - 28607729
Alignment:
| Q |
141 |
gaaagtggaaaagaaattgcttagaatctttagaacacacatcaagagtataatgataagtgtaaagggccaacttggttgatagaaaacgggcacgaac |
240 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28608051 |
gaaagtggaaaacaaagtgcttagaatctttagaacacacatcaagagtataatgataagtgtaaagggccaacttggttgatagaaaacgggcacgaac |
28607952 |
T |
|
| Q |
241 |
atgagtttcaatccacttccaataaagtaaattggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgag |
340 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28607951 |
atgagtttcaatccactgccaataaagtaaattggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccgtgag |
28607852 |
T |
|
| Q |
341 |
gtaaaatcaacccgtatacaaatgcaccaacaacgtcatgtgtaccaagaatatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaa |
440 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28607851 |
gtaaaatcaacccgtatacaaatgcaccaacaacgtcatgtgtaccaagaatatcagttatgtatgagaaaacaaaaagtcccatcaccacaaagactaa |
28607752 |
T |
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| Q |
441 |
ttggttaccatcccattcatctc |
463 |
Q |
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||||||||||||||||||||||| |
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| T |
28607751 |
ttggttaccatcccattcatctc |
28607729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 278 - 463
Target Start/End: Original strand, 7589668 - 7589852
Alignment:
| Q |
278 |
ctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaatgcaccaacaacgtc |
377 |
Q |
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| T |
7589668 |
ctagaaacacaccaccaaaatcattggtcgttgacgtgaccatgtcagcaaa-ttactgtgtggtaaaatcaaccggtacattgaagcaccaacaatgtt |
7589766 |
T |
|
| Q |
378 |
atgtgtaccaagaatatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctc |
463 |
Q |
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| T |
7589767 |
aggtgtgccgagaatatatgttatgtgggagcgataaaaaattcccatgaccacaaagagatattggttatcattccattaatctc |
7589852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 28598693 - 28598553
Alignment:
| Q |
18 |
actaatagtaatggttttgatagatcaatggagaggtctatgttccttgaacttgctttggctgcaatggatgagttggtgaagatggcacaaactaatg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28598693 |
actaatagtaatggttttgatagatcaatggagaggtctatgttccttgaacttgctttggctgcaatggatgagttggtgaagatggcacaaacaaatg |
28598594 |
T |
|
| Q |
118 |
aacctctttggattagaagtgttgaaagtggaaaagaaatt |
158 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
28598593 |
aacctctttggattagaagtgttgaaagtggaaaagaaatt |
28598553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 111; Significance: 8e-56; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 141 - 463
Target Start/End: Original strand, 438852 - 439174
Alignment:
| Q |
141 |
gaaagtggaaaagaaattgcttagaatctttagaacacacatcaagagtataatgataagtgtaaagggccaacttggttgatagaaaacgggcacgaac |
240 |
Q |
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|||||||| ||| ||| |||||| ||||||| ||||||||| |||||||||||||||||||||| ||| ||| |||| ||| |||||| || | | |
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| T |
438852 |
gaaagtggcaaacaaagtgcttaaaatctttggaacacacaacaagagtataatgataagtgtataggcacaatttggctgaaagaaaatggttttcacc |
438951 |
T |
|
| Q |
241 |
atgagtttcaatccacttccaataaagtaaattggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgag |
340 |
Q |
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|||||||| ||||| | ||| |||||| || ||||| ||||| ||| ||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
438952 |
atgagttttgatccattgccacaaaagtagatcggtgcaagaaagccaataccaaaatcattagtcattgacacgaccatgtcagcaaatttaccgtgag |
439051 |
T |
|
| Q |
341 |
gtaaaatcaacccgtatacaaatgcaccaacaacgtcatgtgtaccaagaatatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaa |
440 |
Q |
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|||||||||||||||||| ||| || |||||||| |||||||| |||||| |||| | |||| |||||||||| | ||| ||||| | ||||| |||| |
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| T |
439052 |
gtaaaatcaacccgtataaaaaagccccaacaacatcatgtgtgccaagagtatcggctatgaatgagaaaaccataaggcccataaagacaaaaactag |
439151 |
T |
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| Q |
441 |
ttggttaccatcccattcatctc |
463 |
Q |
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| T |
439152 |
ttggttagcatcccattcatctc |
439174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 274 - 463
Target Start/End: Complemental strand, 13659293 - 13659104
Alignment:
| Q |
274 |
ggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaatgcaccaacaa |
373 |
Q |
| |
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|||||||||||||| || | |||||||| ||||| || ||||| || |||||||||||||| |||||||||||||||||||| ||||| || ||||||| |
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| T |
13659293 |
ggtgctagaaacccgccgcaaaaatcatcagtcagtgtagtgacgatatcagcaaatttaccgtgaggtaaaatcaacccgtacacaaaagccccaacaa |
13659194 |
T |
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| Q |
374 |
cgtcatgtgtaccaagaatatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctc |
463 |
Q |
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||| ||||| |||||||||||||||||| ||||| ||||||||| |||||||| | ||||| ||||| ||| | | ||||||||||| |
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| T |
13659193 |
tgtcttgtgttccaagaatatctgttatgcatgagcaaacaaaaatccccatcacaagaaagagtaattctttatcgttccattcatctc |
13659104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 280 - 463
Target Start/End: Complemental strand, 13651801 - 13651618
Alignment:
| Q |
280 |
agaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaatgcaccaacaacgtcat |
379 |
Q |
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|||||| | |||||||| |||| ||||||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||| || || |||| || | |
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| T |
13651801 |
agaaactcgccaccaaagtcatcagtcattgacgtgaccatatcagcaaatttaccatgaggcaaaatcaacccgtacacaaaagctccgacaatatctt |
13651702 |
T |
|
| Q |
380 |
gtgtaccaagaatatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctc |
463 |
Q |
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|||| ||||||||| ||||||| |||||| ||||||| | ||||||| | ||||| |||||| ||| ||||||||||||||| |
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| T |
13651701 |
gtgtgccaagaatacctgttatatatgagcaaacaaacatccccatcagaagaaagagtaattgtttatcatcccattcatctc |
13651618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 12326517 - 12326417
Alignment:
| Q |
33 |
tttgatagatcaatggagaggtctatgttccttgaacttgctttggctgcaatggatgagttggtgaagatggcacaaactaatgaacctctttggatta |
132 |
Q |
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| T |
12326517 |
tttgatagatcggttgaaaggtctatgtttcttgaacttgctttggctgctatggatgagttggttaagatggcacaaactagtgaccctctttggatta |
12326418 |
T |
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| Q |
133 |
g |
133 |
Q |
| |
|
| |
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| T |
12326417 |
g |
12326417 |
T |
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