View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_low_61 (Length: 251)
Name: NF4780_low_61
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_low_61 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 1279146 - 1278903
Alignment:
| Q |
8 |
agattattctgatgtgatagcaggaacaagtactggaggactcattgctgctatgcttgctgctcctaacttgaatgatacttctcgtcctgcatttact |
107 |
Q |
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| T |
1279146 |
agattattttgatgtgatagcagggacaagtactggaggactcattgctgctatgcttgctgctcctaacttgaatgatacttctcgtcctgcatttact |
1279047 |
T |
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| Q |
108 |
gctaaagaaatcttacaattctacttggattatggtacatctatattcaaccaaactgctgctaggtatttcatagaaacaatataattctatttatatt |
207 |
Q |
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| T |
1279046 |
gctaaagaaatcttacaattctacttggattatggtcaatctatattcaaccaaactgctgctaggtatttcatagaaacaatatcattctatttatatt |
1278947 |
T |
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| Q |
208 |
atggaaaatgatatattcagtgaaaaatttcatgcgaaatcatc |
251 |
Q |
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| T |
1278946 |
atggaaaatgatatattcagcgaaaaatttcatgcgaaatcatc |
1278903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 1201144 - 1200970
Alignment:
| Q |
8 |
agattattctgatgtgatagcaggaacaagtactggaggactcattgctgctatgcttgctgctcctaacttgaatgatacttctcgtcctgcatttact |
107 |
Q |
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|||||||| |||||||||| |||| || || |||||||||||||||||||||||||| || ||||| || ||||| ||||||||||| | || || |
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| T |
1201144 |
agattattttgatgtgataacagggactagcactggaggactcattgctgctatgctcactactcctcacccaaatgacccttctcgtcctctactttct |
1201045 |
T |
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| Q |
108 |
gctaaagaaatcttacaattctacttggattatggtacatctatattcaaccaaactgctgctaggtatttcata |
182 |
Q |
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| T |
1201044 |
cctgaacaaatcaaacaattctacttggattttggtccttctatattcaaccaaactgctgctaggtatttcata |
1200970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 1228205 - 1228036
Alignment:
| Q |
9 |
gattattctgatgtgatagcaggaacaagtactggaggactcattgctgctatgcttgctgctcctaacttgaatgatacttctcgtcctgcatttactg |
108 |
Q |
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||||||| |||||||||||| || || || || |||||| |||||||| | |||||||||||||| ||| ||||| |||||||||||||||||||| |
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| T |
1228205 |
gattattttgatgtgatagcggggaccagcacaggaggaatcattgctaccatgcttgctgctcccaacccaaatgacacttctcgtcctgcatttacca |
1228106 |
T |
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| Q |
109 |
ctaaagaaatcttacaattctacttggattatggtacatctatattcaaccaaactgctgctaggtattt |
178 |
Q |
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| T |
1228105 |
ctccagaaattttagaattctacctaaaatatggtccttcaatattcaatcaaacttctgctaggtattt |
1228036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 1243616 - 1243446
Alignment:
| Q |
9 |
gattattctgatgtgatagcaggaacaagtactggaggactcattgctgctatgcttgctgctcctaacttgaatgatacttctcgtcctgcatttactg |
108 |
Q |
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| T |
1243616 |
gattattttgatgtgatatcaggggctagcacaggaggactcattgctgctatgcttgctgctcctcatccaaacgacccttctcgccctgcactttata |
1243517 |
T |
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| Q |
109 |
ctaaagaaatcttacaattctacttggattatggtacatctatattcaaccaaactgctgctaggtatttc |
179 |
Q |
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| T |
1243516 |
ctcctgaaatcttaaaattctacttagactttggtccttctatattcaatcaaacttccgctaggtatttc |
1243446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 1254315 - 1254145
Alignment:
| Q |
9 |
gattattctgatgtgatagcaggaacaagtactggaggactcattgctgctatgcttgctgctcctaacttgaatgatacttctcgtcctgcatttactg |
108 |
Q |
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| T |
1254315 |
gattattttgatgtgatatcaggggctagcacaggaggactcattgctgctatgcttgctgctcctcatccaaacgacccttctcgccctgcactttata |
1254216 |
T |
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| Q |
109 |
ctaaagaaatcttacaattctacttggattatggtacatctatattcaaccaaactgctgctaggtatttc |
179 |
Q |
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|| ||||||||| |||||||||| || | |||| | ||||||||||| |||||| | |||||||||||| |
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| T |
1254215 |
ctcctgaaatcttaaaattctacttagactttggtccttctatattcaatcaaacttccgctaggtatttc |
1254145 |
T |
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