View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_low_64 (Length: 250)
Name: NF4780_low_64
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_low_64 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 32647461 - 32647222
Alignment:
| Q |
1 |
cttctctttgtgaaatctggaaagtcgaaaacagcaagcaattgaaatttcacaaagctcaaaatcaattcattcagttccatcataccatacggttgga |
100 |
Q |
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| T |
32647461 |
cttctctttgtgaaatctggaaagtcgaaaacagcaagcaattgaaatttcacaaagctcaaaatcaattcattcagttccatcataccatacggttgga |
32647362 |
T |
|
| Q |
101 |
gagtacaacagaatctgatagagatgaaaatggtggaagttatgaacctgcatcaggagatcttattgctattacatacattaagccaaaaagcttaaat |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32647361 |
gagtacaactgaatctgatagagatgaaaatggtggaagttatgaacctgcatcaggagatcttattgctattacatacattaagccaaaaagcttaaat |
32647262 |
T |
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| Q |
201 |
gacttgaacacactcaacagtccctaccatattgcctatg |
240 |
Q |
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| T |
32647261 |
gacttgaacacactcaacagtccctaccatattgcctatg |
32647222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 140 - 239
Target Start/End: Original strand, 32567057 - 32567156
Alignment:
| Q |
140 |
ttatgaacctgcatcaggagatcttattgctattacatacattaagccaaaaagcttaaatgacttgaacacactcaacagtccctaccatattgcctat |
239 |
Q |
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| T |
32567057 |
ttatgaacctgcgtcaggagatcttattgctattacatacatcaggccaaaaagcttaaatgacttgaacacacttaacagtccctaccatattgcctat |
32567156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 32566948 - 32567053
Alignment:
| Q |
4 |
ctctttgtgaaatctggaaagtcgaaaacagcaagcaattgaaatttcacaaagctcaaaatcaattcattcagttccatcataccatacggttggagag |
103 |
Q |
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| T |
32566948 |
ctctttgtgaaatcaagaatgtcgaacacagcaagcagttgaaacttcgcaaagctcaaaatcaattcattcagttccatcataccatatggttgaagag |
32567047 |
T |
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| Q |
104 |
tacaac |
109 |
Q |
| |
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|||||| |
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| T |
32567048 |
tacaac |
32567053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 54 - 240
Target Start/End: Complemental strand, 32533373 - 32533187
Alignment:
| Q |
54 |
aaagctcaaaatcaattcattcagttccatcataccatacggttggagagtacaacagaatctgatagagatgaaaatggtggaagttatgaacctgcat |
153 |
Q |
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|||| ||||||||||||||| |||||||||||| ||||||| | |||||||||| ||||||||| || |||| | | ||||| |||| |||||| | |
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| T |
32533373 |
aaagatcaaaatcaattcatacagttccatcatgacatacggctaaagagtacaactgaatctgatgaagttgaagacgttggaaattataaacctgtgt |
32533274 |
T |
|
| Q |
154 |
caggagatcttattgctattacatacattaagccaaaaagcttaaatgacttgaacacactcaacagtccctaccatattgcctatg |
240 |
Q |
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| T |
32533273 |
caggggatctcattgctttcacacacattaggcctaaaagcttaaatgacttgaacacactccaaagcccctaccgtatcgcctatg |
32533187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 232
Target Start/End: Complemental strand, 32526930 - 32526711
Alignment:
| Q |
7 |
tttgtgaaatctggaaagtcgaaaacagcaagcaattgaaatttcacaaagctcaaaatcaattcattcagttccatcataccatacggttggagagtac |
106 |
Q |
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||||||||||| |||||| ||| |||||||||||| || ||| |||||||||||| || |||| ||||||| ||||| |||| |||| ||||||| |
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| T |
32526930 |
tttgtgaaatcaagaaagttataaaaagcaagcaattgcaacttcccaaagctcaaaagcatttcaaacagttccgtcataagatacagttgaagagtac |
32526831 |
T |
|
| Q |
107 |
aacagaatctgatagagatgaaaatggtggaagttatgaacctgcatcaggagatcttattgctattacatacattaagccaaaaagcttaaatgacttg |
206 |
Q |
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|| | | || | ||| |||||||| ||||||||||| | |||||||| |||||| | ||| |||||| || ||||||||| |||||||| |
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| T |
32526830 |
------attttacagtgtggaagatggtggagattatgaacctggaagtggagatctcattgctttcacaaacattagacccaaaagcttagatgacttg |
32526737 |
T |
|
| Q |
207 |
aacacactcaacagtccctaccatat |
232 |
Q |
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||||||||||| |||||||||||||| |
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| T |
32526736 |
aacacactcaaaagtccctaccatat |
32526711 |
T |
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