View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_low_66 (Length: 250)
Name: NF4780_low_66
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_low_66 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 37240157 - 37239913
Alignment:
| Q |
1 |
taggatccaccaattttcgaagaccttctaaaggatccatttgatgaagtgcttcttcaaactgcaatacaaaacaattatggataatttttgttct-gt |
99 |
Q |
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| T |
37240157 |
taggatccaccaattttcgaagaccttctaaaggatccattcgatgaagtgcttcttcaaactgcaatacaaaataatcaaggataacttttgttctggt |
37240058 |
T |
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| Q |
100 |
ttaagtgagaattcattcacttcactgaatttaaaatgtacacaattactagc---ataacattttactataaatatatacatgaaatgagtgttttctt |
196 |
Q |
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|||||| |||| |||||| || ||||||||||||||||||| |||||||| | | || ||||||| |||| ||||||||||||||||||||||||| |
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| T |
37240057 |
ttaagt--gaatgcattcagtttactgaatttaaaatgtacataattactaacttaaaaatattttac--taaaaatatacatgaaatgagtgttttctt |
37239962 |
T |
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| Q |
197 |
aataaatatggtatatagacctaccaattgtacaagaccctttgcttct |
245 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
37239961 |
aataaatatggtatctagacctaccaattgtacaagaccctttgattct |
37239913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 37316377 - 37316304
Alignment:
| Q |
1 |
taggatccaccaattttcgaagaccttctaaaggatccatttgatgaagtgcttcttcaaactgcaatacaaaa |
74 |
Q |
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|||||||||||| ||| ||||||| |||||||||||| | |||| |||||||||||||||||||||||||||| |
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| T |
37316377 |
taggatccaccagtttgcgaagactttctaaaggatcagtctgattaagtgcttcttcaaactgcaatacaaaa |
37316304 |
T |
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