View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_low_7 (Length: 464)
Name: NF4780_low_7
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 69; Significance: 9e-31; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 278 - 382
Target Start/End: Original strand, 16022274 - 16022378
Alignment:
| Q |
278 |
gtcatttcatgcttatcatttccacaatccatgagttgaatagaaagtatttttggttttggtgtatgcgatgaaataaaccatgttacagaacatataa |
377 |
Q |
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| T |
16022274 |
gtcacttcatgcttctcatttccacagtccatgagttgaatagacagtgtctttggttttggtgactgcaatgaaataaaccatgttacagaacatataa |
16022373 |
T |
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| Q |
378 |
cacta |
382 |
Q |
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||||| |
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| T |
16022374 |
cacta |
16022378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 278 - 391
Target Start/End: Complemental strand, 14389871 - 14389758
Alignment:
| Q |
278 |
gtcatttcatgcttatcatttccacaatccatgagttgaatagaaagtatttttggttttggtgtatgcgatgaaataaaccatgttacagaacatataa |
377 |
Q |
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|||| ||||||||| ||||||||| |||| |||| ||||||||||||| | ||||||||||||| ||| || ||||||||||||||||| ||||||||| |
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| T |
14389871 |
gtcacttcatgcttttcatttccaaaatcaatgaattgaatagaaagtgtctttggttttggtgactgcaataaaataaaccatgttacaaaacatataa |
14389772 |
T |
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| Q |
378 |
cactacttaaaact |
391 |
Q |
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| T |
14389771 |
cactccttaaaact |
14389758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 255 - 325
Target Start/End: Complemental strand, 14368619 - 14368549
Alignment:
| Q |
255 |
atctgtttcaatgcaagtttggtgtcatttcatgcttatcatttccacaatccatgagttgaatagaaagt |
325 |
Q |
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| T |
14368619 |
atctgtttcaatgtaagtttggtgtcatttcaagcttatcatttccacaatccatgagttgaatggaaagt |
14368549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 14368681 - 14368613
Alignment:
| Q |
150 |
tttccaacacttaagagttagatgctttgtggttatcatggatcttatgttattaaattagtatctgtt |
218 |
Q |
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| T |
14368681 |
tttccaacacttaatagttagatgctttgtggttatcatggttcttgtgttattaaattagtatctgtt |
14368613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 13852950 - 13853015
Alignment:
| Q |
217 |
ttacaaccattgacctctagtgaaagtatgtgttatgcatctgtttcaatgcaagtttggtgtcat |
282 |
Q |
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| T |
13852950 |
ttacaacaattgacctatagtgaaagtatgtgttctgcatctgtttgaatgcaagtttggtgtcat |
13853015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 344 - 394
Target Start/End: Original strand, 13881418 - 13881468
Alignment:
| Q |
344 |
tgcgatgaaataaaccatgttacagaacatataacactacttaaaactcca |
394 |
Q |
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| T |
13881418 |
tgcgaggaaataaaccatgttacaaaacatataacactacttaaaactcca |
13881468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 14398173 - 14398108
Alignment:
| Q |
216 |
gttacaaccattgacctctagtgaaagtatgtgttatgcatctgtttcaatgcaagtttggtgtca |
281 |
Q |
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| T |
14398173 |
gttacaagaattgacctctagtggaagtatgtgttctgcatctgtttaaatgcaattttggtgtca |
14398108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 13883392 - 13883456
Alignment:
| Q |
217 |
ttacaaccattgacctctagtgaaagtatgtgttatgcatctgtttcaatgcaagtttggtgtca |
281 |
Q |
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| T |
13883392 |
ttacaacaattgatctctagtcaaagtatgtgttcttcatctgtttgaatgcaagtttggtgtca |
13883456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 281
Target Start/End: Complemental strand, 14392014 - 14391953
Alignment:
| Q |
220 |
caaccattgacctctagtgaaagtatgtgttatgcatctgtttcaatgcaagtttggtgtca |
281 |
Q |
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| T |
14392014 |
caacaattgacctcgggtgaaagcatgtgttctgcatctgtttgaatgcaattttggtgtca |
14391953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 395
Target Start/End: Original strand, 13856742 - 13856789
Alignment:
| Q |
348 |
atgaaataaaccatgttacagaacatataacactacttaaaactccat |
395 |
Q |
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| T |
13856742 |
atgaaataaaccatgttaccaaacatataacactccttaaaattccat |
13856789 |
T |
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