View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_low_72 (Length: 243)
Name: NF4780_low_72
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_low_72 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 32647868 - 32647638
Alignment:
| Q |
19 |
accgatcacacaaacatatcaggagatacgttcaaatcattttttacccatcggaagctatcttccgatcgatcnnnnnnncaggctttagcaacttggg |
118 |
Q |
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| T |
32647868 |
accgatcacacaaacatatcaggagatacgttcaaatcattttttacccatcggaagctatcttccgatcgatctttttttcaggctttagcaacttggg |
32647769 |
T |
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| Q |
119 |
cgccctatagagcgacctcaataatttcaaggaattgtttttatgtgtgtgttcgatatatat------aggcccggaaaacatatctaaactttttatt |
212 |
Q |
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| T |
32647768 |
cgccctatagagcaaccttaataatttcaaggaattatttttatgtgtgtgttcgatatatataggcataggcccggaaaacatatctaaactttttatt |
32647669 |
T |
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| Q |
213 |
ttctattgagtgcaaccatcttataacattt |
243 |
Q |
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| T |
32647668 |
ttctattgagtgcaaccatcttataatattt |
32647638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 32566547 - 32566768
Alignment:
| Q |
19 |
accgatcacacaaacatatcaggagatacgttcaaatcatttttta---cccatcggaagctatcttccgatcgatcnnnnnnncaggctttagcaactt |
115 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||||| ||||||| ||||||| |||||||||||| |||||| ||||||||| |
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| T |
32566547 |
accgatcacacaaacatatcaggaaatacgttcaaatcgttttttattccccatcgaaagctatattccgatcgatctttttt-caggctatagcaactt |
32566645 |
T |
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| Q |
116 |
gggcgccctatagagcgacctc---aataatttcaaggaattgtttttatgtgtgtgttcgatatatataggcccggaaaacatatctaaactttttatt |
212 |
Q |
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| T |
32566646 |
gggcgccatatagagcaaccttcttaataatttcaaggaattttttgtatgtgt--------tcaatataggcccagaaaacatatctaaactttttatt |
32566737 |
T |
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| Q |
213 |
ttctattgagtgcaaccatcttataacattt |
243 |
Q |
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| T |
32566738 |
ttctattgagtgcaaccatcttataacattt |
32566768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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