View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4780_low_73 (Length: 240)

Name: NF4780_low_73
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4780_low_73
NF4780_low_73
[»] chr8 (6 HSPs)
chr8 (4-81)||(11901984-11902060)
chr8 (157-218)||(10584023-10584084)
chr8 (157-217)||(8446779-8446839)
chr8 (165-218)||(45256433-45256487)
chr8 (157-218)||(17658303-17658365)
chr8 (157-218)||(36156625-36156687)
[»] scaffold0007 (1 HSPs)
scaffold0007 (157-222)||(181600-181665)
[»] chr4 (13 HSPs)
chr4 (157-222)||(31863737-31863802)
chr4 (157-218)||(19164457-19164518)
chr4 (157-218)||(52741445-52741506)
chr4 (157-218)||(34005365-34005426)
chr4 (157-218)||(42777710-42777771)
chr4 (164-218)||(18107164-18107218)
chr4 (157-218)||(30274421-30274482)
chr4 (157-218)||(42822915-42822976)
chr4 (164-218)||(34322927-34322981)
chr4 (174-214)||(12881297-12881337)
chr4 (174-218)||(1844866-1844910)
chr4 (166-218)||(53487561-53487613)
chr4 (164-218)||(53779521-53779577)
[»] chr1 (13 HSPs)
chr1 (157-222)||(25592078-25592143)
chr1 (157-218)||(10711712-10711773)
chr1 (157-218)||(10722510-10722571)
chr1 (157-218)||(1395042-1395103)
chr1 (157-218)||(40292692-40292753)
chr1 (157-216)||(9903875-9903934)
chr1 (157-216)||(17707467-17707526)
chr1 (157-218)||(30111532-30111593)
chr1 (157-218)||(47107272-47107334)
chr1 (157-216)||(41061755-41061814)
chr1 (157-216)||(49968797-49968857)
chr1 (157-218)||(47586791-47586854)
chr1 (157-218)||(12173676-12173738)
[»] chr3 (11 HSPs)
chr3 (157-222)||(8695495-8695560)
chr3 (157-222)||(9047382-9047447)
chr3 (157-218)||(1764603-1764664)
chr3 (157-218)||(11639437-11639498)
chr3 (164-218)||(32233687-32233742)
chr3 (157-215)||(33121928-33121986)
chr3 (175-218)||(19221618-19221661)
chr3 (157-218)||(25341942-25342004)
chr3 (164-218)||(36634916-36634970)
chr3 (157-218)||(49500941-49501003)
chr3 (157-216)||(26845341-26845400)
[»] scaffold0227 (1 HSPs)
scaffold0227 (157-222)||(8392-8457)
[»] chr6 (3 HSPs)
chr6 (157-218)||(6831539-6831600)
chr6 (157-218)||(17079799-17079860)
chr6 (179-215)||(9199862-9199898)
[»] chr7 (7 HSPs)
chr7 (157-218)||(29114157-29114218)
chr7 (157-218)||(34231170-34231231)
chr7 (158-218)||(24752890-24752950)
chr7 (157-218)||(7459278-7459340)
chr7 (157-218)||(20037608-20037670)
chr7 (178-218)||(18654441-18654481)
chr7 (175-218)||(20047739-20047782)
[»] chr5 (4 HSPs)
chr5 (157-218)||(27895376-27895437)
chr5 (164-215)||(4416311-4416362)
chr5 (175-218)||(6048726-6048769)
chr5 (157-216)||(20209330-20209389)
[»] chr2 (5 HSPs)
chr2 (164-218)||(9393014-9393069)
chr2 (164-218)||(3000356-3000410)
chr2 (164-218)||(7075590-7075644)
chr2 (157-218)||(22295938-22296000)
chr2 (157-201)||(1379570-1379614)
[»] scaffold0765 (1 HSPs)
scaffold0765 (157-218)||(1394-1455)
[»] scaffold0481 (1 HSPs)
scaffold0481 (164-217)||(1351-1404)


Alignment Details
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 11902060 - 11901984
Alignment:
Q  4 ttaaaattttatctcttttcagtgcacttggcaaattatgtatcaaagtttttggcgatgttgtcggaaattattgat 81  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  11902060 ttaaaattttatctcttttcagtgcacttggcaaattatgtatc-aagtttttggcgatgttgtcgggaattattgat 11901984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 10584084 - 10584023
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  10584084 aacaatcaaaaatgaaattatattaatcaccaaaagcaactcttctagcacaaggtgtgcca 10584023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 8446839 - 8446779
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcc 217  Q
    ||||| |||||||| ||||||||||| || ||||||||| |||||| ||||||||||||||    
T  8446839 aacaatcaaaaatggaattatattaatcatcaaaagcaactcttctggcacaaggtgtgcc 8446779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 45256487 - 45256433
Alignment:
Q  165 aaaatgaaat-tatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    |||||||||| ||||||||||||||||| ||| || |||||||||||||||||||    
T  45256487 aaaatgaaatatatattaaccaccaaaaacaactcctctagcacaaggtgtgcca 45256433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 17658303 - 17658365
Alignment:
Q  157 aacaaacaaaaatgaaat-tatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||| |||||||| ||| ||||||||||||||||||||  || | |||||||||||||||||    
T  17658303 aacaaccaaaaatggaatatatattaaccaccaaaagcagctcctgtagcacaaggtgtgcca 17658365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 36156625 - 36156687
Alignment:
Q  157 aacaaacaaaaatgaaat-tatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||| |||||||||||| |||||||||||| ||||| || |||||||| ||||| |||||||    
T  36156625 aacaagcaaaaatgaaatatatattaaccacaaaaagtaactcttctagtacaagatgtgcca 36156687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 181600 - 181665
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgccacaag 222  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  181600 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagcacaaggtgtgccacaag 181665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 31863737 - 31863802
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgccacaag 222  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31863737 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagcacaaggtgtgccacaag 31863802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 19164457 - 19164518
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  19164457 aacaatcaaaaatggaattatattaaccaccaaaagcaactcttctagcacaaggtgtgcca 19164518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 52741506 - 52741445
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  52741506 aacaatcaaaaatgaaattatattaatcaccaaaagcaactcttctagcacaaggtgtgcca 52741445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 34005365 - 34005426
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||| | |||||||||||    
T  34005365 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtataaggtgtgcca 34005426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 42777710 - 42777771
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    |||||||||||||| ||||||| ||| |||||||||||| ||||||||||||||||||||||    
T  42777710 aacaaacaaaaatggaattataataatcaccaaaagcaactcttctagcacaaggtgtgcca 42777771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 18107218 - 18107164
Alignment:
Q  164 aaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||||| ||||||||||| |||||||||||| |||||| |||||||||||||||    
T  18107218 aaaaatggaattatattaatcaccaaaagcaactcttctggcacaaggtgtgcca 18107164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 30274482 - 30274421
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||| |||||||| ||||||||||| |||||||||||| |||||||||| ||| |||||||    
T  30274482 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcataagatgtgcca 30274421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 42822915 - 42822976
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||| |||||||| |||||||| || |||||||||||| ||||||||||||| ||||||||    
T  42822915 aacaatcaaaaatggaattatataaatcaccaaaagcaactcttctagcacaaagtgtgcca 42822976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 34322981 - 34322927
Alignment:
Q  164 aaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||||| |||||||| || |||||||| ||| ||||||||||||||||||||||    
T  34322981 aaaaatggaattatataaatcaccaaaaacaactcttctagcacaaggtgtgcca 34322927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 12881337 - 12881297
Alignment:
Q  174 ttatattaaccaccaaaagcaattcttctagcacaaggtgt 214  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  12881337 ttatattaaccaccaaaagcaactcctctagcacaaggtgt 12881297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 1844910 - 1844866
Alignment:
Q  174 ttatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    |||||||||||| ||||| ||| || |||||||||||||||||||    
T  1844910 ttatattaaccatcaaaaacaactcctctagcacaaggtgtgcca 1844866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 53487613 - 53487561
Alignment:
Q  166 aaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||| |||||||| || ||| |||||||| |||||||||||||| |||||||    
T  53487613 aaatggaattatataaatcacaaaaagcaactcttctagcacaagatgtgcca 53487561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 53779521 - 53779577
Alignment:
Q  164 aaaaatgaaat-tatattaac-caccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||||||||| ||||||||  |||||||||||| ||| ||||||||||||||||||    
T  53779521 aaaaatgaaatatatattaaaacaccaaaagcaactctcctagcacaaggtgtgcca 53779577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 25592143 - 25592078
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgccacaag 222  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25592143 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagcacaaggtgtgccacaag 25592078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 10711773 - 10711712
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10711773 aacaatcaaaaatgaaattatattaaccaccaaaagcaactcttctagcacaaggtgtgcca 10711712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 10722510 - 10722571
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  10722510 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagcacaaggtgtgcca 10722571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 1395103 - 1395042
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||| |||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||    
T  1395103 aacaatcaaaaatggaattatattaaccaccaaaaacaactcttctagcacaaggtgtgcca 1395042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 40292753 - 40292692
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||| |||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||    
T  40292753 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgcca 40292692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 9903934 - 9903875
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgc 216  Q
    ||||| |||||||| |||||| ||||||||||||||||| |||||||| |||||||||||    
T  9903934 aacaatcaaaaatggaattatgttaaccaccaaaagcaactcttctagtacaaggtgtgc 9903875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 17707467 - 17707526
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgc 216  Q
    ||||| |||||| ||||||||||||| ||||| |||||| ||||||||||||||||||||    
T  17707467 aacaatcaaaaaagaaattatattaatcaccacaagcaactcttctagcacaaggtgtgc 17707526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 30111593 - 30111532
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||| |||||||| ||||||||||| || ||||| ||| ||||||||||||||||||||||    
T  30111593 aacaatcaaaaatggaattatattaatcatcaaaaacaactcttctagcacaaggtgtgcca 30111532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 47107334 - 47107272
Alignment:
Q  157 aacaaacaaaaatgaaat-tatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||| |||||||||||| ||||||||| ||||||||||| || ||||| |||||||||||||    
T  47107334 aacaatcaaaaatgaaatatatattaactaccaaaagcaactcctctagtacaaggtgtgcca 47107272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 41061814 - 41061755
Alignment:
Q  157 aacaaacaaaaatgaaat-tatattaaccaccaaaagcaattcttctagcacaaggtgtgc 216  Q
    ||||| |||||||| ||| ||||||||| ||||||||||| ||||||||||||||||||||    
T  41061814 aacaatcaaaaatggaatatatattaac-accaaaagcaactcttctagcacaaggtgtgc 41061755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 49968797 - 49968857
Alignment:
Q  157 aacaaacaaaaatgaaatt-atattaaccaccaaaagcaattcttctagcacaaggtgtgc 216  Q
    ||||| |||||||| |||| |||||||||||||||||||| |  |||||||||||||||||    
T  49968797 aacaatcaaaaatggaatttatattaaccaccaaaagcaacttctctagcacaaggtgtgc 49968857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 47586791 - 47586854
Alignment:
Q  157 aacaaacaaaaatgaaat-tatattaaccaccaaaagc-aattcttctagcacaaggtgtgcca 218  Q
    |||||||||||||| ||| ||||||||||||||||||| || || |||| ||||||||||||||    
T  47586791 aacaaacaaaaatggaatatatattaaccaccaaaagcaaactcctctaacacaaggtgtgcca 47586854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 12173676 - 12173738
Alignment:
Q  157 aacaaacaaaaatgaaat-tatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    |||||||||||||| ||| |||||||||||| |||| ||| || ||||||||||| |||||||    
T  12173676 aacaaacaaaaatggaatatatattaaccacaaaaaacaactcctctagcacaagatgtgcca 12173738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 8695560 - 8695495
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgccacaag 222  Q
    |||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8695560 aacaaacaaaaatataattatattaaccaccaaaagcaactcttctagcacaaggtgtgccacaag 8695495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 9047447 - 9047382
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgccacaag 222  Q
    |||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9047447 aacaaacaaaaatataattatattaaccaccaaaagcaactcttctagcacaaggtgtgccacaag 9047382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 1764603 - 1764664
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||| |||||||||||||||||||| |||||||||||| ||||||| || |||||||||||    
T  1764603 aacaatcaaaaatgaaattatattaatcaccaaaagcaactcttctaacataaggtgtgcca 1764664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 11639437 - 11639498
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||| |||||||| |||||||||||||||||||| ||| |||||| |||||||||||||||    
T  11639437 aacaatcaaaaatggaattatattaaccaccaaaatcaactcttcttgcacaaggtgtgcca 11639498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 32233742 - 32233687
Alignment:
Q  164 aaaaatgaaatt-atattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    |||||||||||| |||||||||||||||||||| || |||||||||||||||||||    
T  32233742 aaaaatgaaatttatattaaccaccaaaagcaactcctctagcacaaggtgtgcca 32233687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 33121986 - 33121928
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtg 215  Q
    ||||| |||||||| ||||||||||| |||||||||||| |||||| ||| ||||||||    
T  33121986 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctggcataaggtgtg 33121928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 19221618 - 19221661
Alignment:
Q  175 tatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||||||| ||||||||||| || |||||||||||||||||||    
T  19221618 tatattaacaaccaaaagcaactcctctagcacaaggtgtgcca 19221661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 25342004 - 25341942
Alignment:
Q  157 aacaaacaaaaatgaaat-tatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||| |||||||||||| |||||||||||||||||||||    ||||||| |||||||||||    
T  25342004 aacaatcaaaaatgaaatatatattaaccaccaaaagcaaccactctagcataaggtgtgcca 25341942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 36634916 - 36634970
Alignment:
Q  164 aaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||||| ||||||||||| |||||||||||| |||| ||| | |||||||||||    
T  36634916 aaaaatggaattatattaatcaccaaaagcaactcttttagtataaggtgtgcca 36634970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 49501003 - 49500941
Alignment:
Q  157 aacaaacaaaaatgaaat-tatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||| |||||||| ||| |||||||||||| |||||||| || ||||||||||| |||||||    
T  49501003 aacaagcaaaaatggaatatatattaaccacaaaaagcaactcctctagcacaagatgtgcca 49500941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 26845341 - 26845400
Alignment:
Q  157 aacaaacaaaaatgaaat-tatattaaccaccaaaagcaattcttctagcacaaggtgtgc 216  Q
    ||||| |||||||| ||| ||||||||| ||||||||||| || |||||||||||||||||    
T  26845341 aacaatcaaaaatggaatatatattaac-accaaaagcaactcctctagcacaaggtgtgc 26845400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 8457 - 8392
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgccacaag 222  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||  ||||||||||    
T  8457 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagcacaagacgtgccacaag 8392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 6831600 - 6831539
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||| |||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||    
T  6831600 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgcca 6831539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 17079860 - 17079799
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||| |||||||| ||||||||||||||||||||| || ||||||||||||||||||||||    
T  17079860 aacaatcaaaaatggaattatattaaccaccaaaagaaactcttctagcacaaggtgtgcca 17079799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 9199898 - 9199862
Alignment:
Q  179 ttaaccaccaaaagcaattcttctagcacaaggtgtg 215  Q
    |||| |||||||||||| |||||||||||||||||||    
T  9199898 ttaatcaccaaaagcaactcttctagcacaaggtgtg 9199862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 29114218 - 29114157
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||| |||||||| ||||||||||| |||||||||||| | ||||||||||||||||||||    
T  29114218 aacaatcaaaaatggaattatattaatcaccaaaagcaactattctagcacaaggtgtgcca 29114157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 34231170 - 34231231
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||| |||||||| ||||||||||| |||||||||||| |||||| |||||||||||||||    
T  34231170 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctggcacaaggtgtgcca 34231231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 24752890 - 24752950
Alignment:
Q  158 acaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    |||| |||||||  |||||||||||||||||||||||  |||| |||||||||||||||||    
T  24752890 acaatcaaaaatagaattatattaaccaccaaaagcagctcttgtagcacaaggtgtgcca 24752950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 7459340 - 7459278
Alignment:
Q  157 aacaaacaaaaatgaaat-tatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    |||||||||||||| ||| |||||||| |||||||||||| ||  ||||||||||||||||||    
T  7459340 aacaaacaaaaatggaatatatattaaacaccaaaagcaactcccctagcacaaggtgtgcca 7459278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 20037670 - 20037608
Alignment:
Q  157 aacaaacaaaaatgaaat-tatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||| |||||||| ||| ||||||||||||||||||||| || ||||||| |||||||||||    
T  20037670 aacaatcaaaaatggaatatatattaaccaccaaaagcaactcctctagcataaggtgtgcca 20037608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 18654481 - 18654441
Alignment:
Q  178 attaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    |||||||||||||||||| || |||||||||||||||||||    
T  18654481 attaaccaccaaaagcaactcctctagcacaaggtgtgcca 18654441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 20047782 - 20047739
Alignment:
Q  175 tatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||||||||||||||||||| || ||||| |||||||||||||    
T  20047782 tatattaaccaccaaaagcaactcctctagtacaaggtgtgcca 20047739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 27895376 - 27895437
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||| |||||||| |||||||||||||||||||||||| |||| | |||||||||||||||    
T  27895376 aacaatcaaaaatggaattatattaaccaccaaaagcaactcttttggcacaaggtgtgcca 27895437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 4416362 - 4416311
Alignment:
Q  164 aaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtg 215  Q
    ||||||| |||||||| || |||||||||||| |||||||||||||||||||    
T  4416362 aaaaatggaattatataaatcaccaaaagcaactcttctagcacaaggtgtg 4416311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 6048726 - 6048769
Alignment:
Q  175 tatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||||||||||||||||||| || ||||||| |||||||||||    
T  6048726 tatattaaccaccaaaagcaactcctctagcataaggtgtgcca 6048769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 20209389 - 20209330
Alignment:
Q  157 aacaaacaaaaatgaaat-tatattaaccaccaaaagcaattcttctagcacaaggtgtgc 216  Q
    ||||| |||||||| ||| ||||||||| ||||||||||| || |||||||||||||||||    
T  20209389 aacaatcaaaaatggaatatatattaac-accaaaagcaactcctctagcacaaggtgtgc 20209330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 9393014 - 9393069
Alignment:
Q  164 aaaaatgaaat-tatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||||||||| ||||||||||||||||||||| || |||||||||||||||||||    
T  9393014 aaaaatgaaatatatattaaccaccaaaagcaactcctctagcacaaggtgtgcca 9393069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 3000410 - 3000356
Alignment:
Q  164 aaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||||| ||||||||||| |||||||||||| |||||| |||||||||||||||    
T  3000410 aaaaatggaattatattaatcaccaaaagcaactcttctggcacaaggtgtgcca 3000356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 7075590 - 7075644
Alignment:
Q  164 aaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||||| ||||||||||| || ||||||||| ||||||||||||||||||||||    
T  7075590 aaaaatggaattatattaatcatcaaaagcaactcttctagcacaaggtgtgcca 7075644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 22296000 - 22295938
Alignment:
Q  157 aacaaacaaaaatgaaat-tatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    ||||| |||||||||||| |||||||||||  ||||||||||| |||| ||||||||||||||    
T  22296000 aacaatcaaaaatgaaatatatattaaccattaaaagcaattcctctaacacaaggtgtgcca 22295938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 1379570 - 1379614
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttc 201  Q
    ||||| |||||||| ||||||||||| |||||||||||| |||||    
T  1379570 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttc 1379614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0765 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0765
Description:

Target: scaffold0765; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 1455 - 1394
Alignment:
Q  157 aacaaacaaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcca 218  Q
    |||||||||||||| || ||||||||  ||||||||||| ||| ||||||||||||||||||    
T  1455 aacaaacaaaaatggaaatatattaaataccaaaagcaactctcctagcacaaggtgtgcca 1394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 1351 - 1404
Alignment:
Q  164 aaaaatgaaattatattaaccaccaaaagcaattcttctagcacaaggtgtgcc 217  Q
    ||||||| ||||||||||| ||| |||| ||| |||| ||||||||||||||||    
T  1351 aaaaatggaattatattaatcactaaaaacaactcttttagcacaaggtgtgcc 1404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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