View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_low_74 (Length: 240)
Name: NF4780_low_74
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_low_74 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 41890112 - 41889951
Alignment:
| Q |
18 |
caaagaagctgcaaatcatgtatgaatgttgattttcttgagttttcatatcaaaataaatagttgttaataagattatcttgctcatgtaatcctgaat |
117 |
Q |
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| T |
41890112 |
caaagaagctgcaaatcatgtatgaatgttggttttcttgagttttcatatcaaaataactagttgttaataagattatcttgctcatgtaatcctgaat |
41890013 |
T |
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| Q |
118 |
gtccaattgaagttgatcctagaaagacaatgcattcttctgaaactgcaaggataccaaag |
179 |
Q |
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| T |
41890012 |
gtccaattgaagttgatcctagaaagacaatgcattcttctgaaactgcaaggataccaaag |
41889951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 41881725 - 41881632
Alignment:
| Q |
45 |
gttgattttcttgagttttcatatcaaaataaatagttgttaataagattatcttgctcatgtaatcctgaatgtccaattgaagttgatccta |
138 |
Q |
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| T |
41881725 |
gttggttttcttgagttttcatatcagaataactaattgttaatgagattatcttgctaatgtaatcttgaattttgggttgaagttgatccta |
41881632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 41864158 - 41864118
Alignment:
| Q |
200 |
ttagaaattaaaatttgtatgtaataacatttttgtccttc |
240 |
Q |
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| T |
41864158 |
ttagaaattaaaatttgtatgtaataacatttttgtccttc |
41864118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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