View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_low_76 (Length: 239)
Name: NF4780_low_76
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_low_76 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 24358457 - 24358660
Alignment:
| Q |
21 |
tttgaccggaatgcagtagaaatagattattcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattt |
120 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24358457 |
tttggccggaatgcagtagaaatagattattcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattt |
24358556 |
T |
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| Q |
121 |
tggatgaatggcttaatcggaagaaggctaaacaaagatcaccttttgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattt |
219 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
24358557 |
tggacgaatggcttaattggaagaaggctaaacaaagatcacctttcgtttctcctcgaccacataaaaaagttcgaggtttggtttggtttcttgattt |
24358656 |
T |
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| Q |
220 |
tctt |
223 |
Q |
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|||| |
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| T |
24358657 |
tctt |
24358660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 29 - 223
Target Start/End: Complemental strand, 24364829 - 24364631
Alignment:
| Q |
29 |
gaatgcagtagaaatagattat---tcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggat |
125 |
Q |
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|||||||||||||||||||||| |||||| |||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24364829 |
gaatgcagtagaaatagattatgattcttcaagtgacactaatgatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattttggat |
24364730 |
T |
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| Q |
126 |
gaatggcttaatcggaagaaggctaaacaaagatcaccttttgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattttctt |
223 |
Q |
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| T |
24364729 |
gaatggcttaatcggaagaaggctagacaaagatcaccttttatttctactcgaccacataagaaagttcgaggtttggtttggtttcttgattttctt |
24364631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 52 - 223
Target Start/End: Original strand, 24369844 - 24370016
Alignment:
| Q |
52 |
cttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaaggctaa |
151 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24369844 |
cttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattttggatgaatggcttaatcggaagaaggctag |
24369943 |
T |
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| Q |
152 |
acaaagatcaccttttgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattttctt |
223 |
Q |
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| T |
24369944 |
acaaagatcaccttttgtttcttctcgaccacataagaaagttcaaggtttggtttggtttcttgattttctt |
24370016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 29 - 200
Target Start/End: Original strand, 24354803 - 24354974
Alignment:
| Q |
29 |
gaatgcagtagaaatagattatt---cttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggat |
125 |
Q |
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|||||||||||||||||| ||| |||||||||| || ||||||| || | || ||||||||||||||||||| || |||||||||||||| |
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| T |
24354803 |
gaatgcagtagaaatagactatgatccttcatgtgatggttatgatgagaaaaatgatattgatcatagtgatgatgag---tctgttgagattttggaa |
24354899 |
T |
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| Q |
126 |
gaatggcttaatcggaagaaggctaaacaaagatcaccttttgtttctcctcgaccacataagaaagttcgaggt |
200 |
Q |
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| T |
24354900 |
gaatggcttaatcagaagaatgctagacaaagatcacctttcgtttctcctcgacctcataagaaagttagaggt |
24354974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 24344529 - 24344634
Alignment:
| Q |
27 |
cggaatgcagtagaaatagattatt---cttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttgg |
123 |
Q |
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|||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| | |
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| T |
24344529 |
cggaatgcagtagaaatagactatgatacttcatgtgacactgatgatgaaaatgacaatgttggtcatagtgatgatg---aatcagttgagattttag |
24344625 |
T |
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| Q |
124 |
atgaatggc |
132 |
Q |
| |
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||||||||| |
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| T |
24344626 |
atgaatggc |
24344634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 191
Target Start/End: Original strand, 24351741 - 24351880
Alignment:
| Q |
49 |
attcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaaggc |
148 |
Q |
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||||||||||||||| |||||||||||||| ||||||| ||| | |||| ||| ||||| ||||||||| |||||||||| |||| ||||| || |
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| T |
24351741 |
attcttcatgtgacactgatgatgaaaatggaaatgttggtcaaa---atgacgatgaatcacttgagatttcagatgaatggcgaaatcagaagattgc |
24351837 |
T |
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| Q |
149 |
taaacaaagatcaccttttgtttctcctcgaccacataagaaa |
191 |
Q |
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|| | |||| |||| || ||| ||||||||||||||||||| |
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| T |
24351838 |
tagaaaaaggccaccattattttatcctcgaccacataagaaa |
24351880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 24313955 - 24314000
Alignment:
| Q |
16 |
tcatatttgaccggaatgcagtagaaatagattattcttcatgtga |
61 |
Q |
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||||| |||||| ||||||| ||||||||||||||||||||||||| |
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| T |
24313955 |
tcatacttgaccagaatgcactagaaatagattattcttcatgtga |
24314000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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