View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_low_78 (Length: 237)
Name: NF4780_low_78
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_low_78 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4998633 - 4998855
Alignment:
| Q |
1 |
cggtggagttagcaaacttaaagttgaatcagttcaatgtttctgataacaaattatccggtgaggttccttctggttttaaccacgaagtttatttgtc |
100 |
Q |
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| T |
4998633 |
cggtggagttaacaaacttaaagttgaatcagttcgatgtttctgataacaaattatccggtgaggttccttccggttttaaccacgaagtttatttgtc |
4998732 |
T |
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| Q |
101 |
aggtctaatgggaaatccaggtttatgtagcaatgttatgaaaaccttaaatccttgttcaaaacaaagacggttttctgttgtggcaatagttgtttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4998733 |
aggtctaatgggaaatccaggtttatgtagcaatgttatgaaaaccttaaatccttgttcaaaacacagacggttttctgttgtggcaatagttgtttta |
4998832 |
T |
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| Q |
201 |
tctgctattcttgtgttgatttt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
4998833 |
tctgctattcttgtgttgatttt |
4998855 |
T |
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