View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_low_79 (Length: 236)
Name: NF4780_low_79
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_low_79 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 36470341 - 36470140
Alignment:
| Q |
16 |
taggcagttaatagaggcaaggcaactagcattgatatctatcgtggcagaactaaggatgtaaatgaatattcatgaacatagataacattacgttcct |
115 |
Q |
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| T |
36470341 |
taggcagttaatagaggcaaggcaactagcgttgatatctatcgtggcataactaaggatgtaaatggatatccatgaacatagataacattacgttcct |
36470242 |
T |
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| Q |
116 |
tctgtccagttggataattatgatatacgttaagtgggtaatccaaagatttcgaggtattcacgaacatatacaaatatccatagataagattttaaaa |
215 |
Q |
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| T |
36470241 |
tatgtccagttggataattatgatatacgttaagtgggtaattcaaagatttcgaggtattcacgaacatatataaatatccatagataagattttaaaa |
36470142 |
T |
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| Q |
216 |
aa |
217 |
Q |
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| T |
36470141 |
aa |
36470140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 33189242 - 33189323
Alignment:
| Q |
137 |
gatatacgttaagtgggtaatccaaagatttcgaggtattcacgaacatatacaaatatccatagataagattttaaaaaat |
218 |
Q |
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||||| |||| || |||||||||| |||||| ||||||||||||| |||||| |||||||| ||||| |||| ||||||| |
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| T |
33189242 |
gatatccgtttagcgggtaatccatagattttgaggtattcacgagtttatacagatatccatggataacatttaaaaaaat |
33189323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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