View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_low_8 (Length: 455)
Name: NF4780_low_8
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 15841422 - 15841850
Alignment:
| Q |
18 |
attaacatgtattcatcaagttttaatatcaaattttaaacaaccgaactgaaaatatcaagtaatagtagttaggagtactcactgtggtgtatttggc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15841422 |
attaacatgtattcatcaagttttaatatcaaattttaaacaaccgaactgaaaatatcaagtaatagtagttaggagtactcactgtggtgtatttggc |
15841521 |
T |
|
| Q |
118 |
ttgcttgctgctctcactagttgctgaaacatcttcctttcatttattgggtccatgcctgatnnnnnnn-tagtcaaagaagatcatttgagtgctgag |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
15841522 |
ttgcttgctgctctcactagttgctgaaacatcttcctttcatttattgggtccatgcctgataaaaaaaatagtcaaagaagatcatttgagtgctgag |
15841621 |
T |
|
| Q |
217 |
tgccattaatccagaaagaatttacttcaacgaataaccaaccttggttaatctcatcaacaactcgaaatgggcagtttgtaagatcttgaagggaaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15841622 |
tgccattaatccagaaagaatttacttcaacgaataaccaaccttggttaatctcatcaacaactcgaaatgggcagtttgtaagatcttgaagggaaac |
15841721 |
T |
|
| Q |
317 |
aagataaacaattgttgaaactgatcgctcctggaaaaccaaaattaaaggctaattagtgaacggagcgccaggggagcacaaaagcactaaaaagata |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15841722 |
aagataaacaattgttgaaactgatcgctcctggaaaaccaaaattaaaggctaattagtgaacggagcgccaggggagcacaaaagcactaaaaagata |
15841821 |
T |
|
| Q |
417 |
atctttagtacccctccagattgatgatg |
445 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
15841822 |
atctttagtacccctccagattgatgatg |
15841850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 15827186 - 15827610
Alignment:
| Q |
18 |
attaacatgtattcatcaagttttaatatcaaattttaaacaaccgaactgaaaatatcaagtaatagtagttaggagtactcactgtggtgtatttggc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
15827186 |
attaacatgtattcatcaagttttaatatcaaattttaatcgaccgaactgaaaatatcaagtaatagtagttaggagtactcactgtggtgtacttggc |
15827285 |
T |
|
| Q |
118 |
ttgcttgctgctctcactagttgctgaaacatcttcctttcatttattgggtccatgcctgatnnnnnnntagtcaaagaagatcatttgagtgctgagt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||| |
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| T |
15827286 |
ttgcttgctgctctcactagttgctgaaacatcttcctttcatttattgggtccatccctgataaaaa---agtcaaagaagatcatttgagtgttgagt |
15827382 |
T |
|
| Q |
218 |
gccattaatccagaaagaatttacttcaacgaataaccaaccttggttaatctcatcaacaactcgaaatgggcagtttgtaagatcttgaagggaaaca |
317 |
Q |
| |
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|| |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15827383 |
tccgttaatccagaaagaatttacttcaacaaataaccaaccttggttgatttcatcaacaactcgaaatgggcagtttgtaagatcttgaagggaaaca |
15827482 |
T |
|
| Q |
318 |
agataaacaattgttgaaactgatcgctcctggaaaaccaaaattaaaggctaattagtgaacggagcgccaggggagcacaaaagcactaaaaagataa |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||| | ||||||||||||||||||||||||||||| |
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|
| T |
15827483 |
agataaacaattgttgaaactgatcgctcctggaaaaccgaaattaaaggttaattggtgaacggagaacaaggggagcacaaaagcactaaaaagataa |
15827582 |
T |
|
| Q |
418 |
tctttagtacccctccagattgatgatg |
445 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
15827583 |
tctttagtacccctccagattgatgatg |
15827610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 15821740 - 15822095
Alignment:
| Q |
18 |
attaacatgtattcatcaagttttaatatcaaattttaaacaaccgaactgaaaatatcaagtaatagtagttaggagtactcactgtggtgtatttggc |
117 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||| ||||||| |||||| ||||||||| |
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|
| T |
15821740 |
attaacatgcatttatcaagttttaatatcaaattttaaacaaaggaaccaaaaagatcaagtaatagtagttagtagtactcgctgtggcgtatttggc |
15821839 |
T |
|
| Q |
118 |
ttgcttgctgctctcactagttgctgaaacatcttcctttcatttattgggtccatgcctgatnnnnnnntagtcaaagaagatcatttgagtgctgagt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||| |||||||||| ||| |||| |
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| T |
15821840 |
ttgcttgctgctctcactagttgctgaaacatcttcctctcatttattgggtccatccctgatgaaaatagagtca---aagatcatttcagttctga-- |
15821934 |
T |
|
| Q |
218 |
gccattaatccagaaagaatttacttcaacgaataaccaaccttggttaatctcatcaacaactcgaaatgggcagtttgtaagatcttgaagggaaaca |
317 |
Q |
| |
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||| ||||||| ||||| ||||||||||| ||||||||||||||| || |||||||| |||| || |||||||||||||||| ||||||||||||||||| |
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| T |
15821935 |
gccgttaatcctgaaaggatttacttcaaagaataaccaaccttgattgatctcatccacaaatcaaaatgggcagtttgtaggatcttgaagggaaaca |
15822034 |
T |
|
| Q |
318 |
agataaacaattgttgaaactgatcgctcctggaaaaccaaaattaaaggctaattagtga |
378 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||||| ||| |||||||||| |
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|
| T |
15822035 |
agataaacaatagttgaaactgatcgctcctggataaccaaaattagaggttaattagtga |
15822095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 97 - 375
Target Start/End: Complemental strand, 10706447 - 10706171
Alignment:
| Q |
97 |
actcactgtggtgtatttggcttgcttgctgctctcactagttgctgaaacatcttcctttcatttattgggtccatgcctgatnnnnnnntagtcaaag |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| | |
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|
| T |
10706447 |
actcactgtggtgtatttggcttgcttgctgctctcactagttgctgaaacatcttcctttcatttattggatccattcctgatacaaagt--gtcaatg |
10706350 |
T |
|
| Q |
197 |
aagatcatttgagtgctgagtgccattaatccagaaagaatttacttcaacgaataaccaaccttggttaatctcatcaacaactcgaaatgggcagttt |
296 |
Q |
| |
|
|||||| ||||||||| ||| |||| |||||||||||||| | || || |||||||||||| || |||||||||||||||| ||||||||||||| |
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|
| T |
10706349 |
aagatctcttgagtgctctctgcggttaaaccagaaagaatttattctaaagactaaccaaccttgattgatctcatcaacaactctaaatgggcagttt |
10706250 |
T |
|
| Q |
297 |
gtaagatcttgaagggaaacaagataaacaattgttgaaactgatcgctcctggaaaaccaaaattaaaggctaattag |
375 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||| ||||||| |
|
|
| T |
10706249 |
gtaagatcttgaagtgaaacaagataaacaatagttgaaactgatcgttcctggaaaaccaaatttaaaggttaattag |
10706171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 94 - 375
Target Start/End: Complemental strand, 47448200 - 47447918
Alignment:
| Q |
94 |
agtactcactgtggtgtatttggcttgcttgctgctctcactagttgctgaaacatcttcctttcatttattgggtccatgcctgatnnnnnnnt-agtc |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | || |
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|
| T |
47448200 |
agtactcactgtggtgtatttggcttgcttgctgctctcactagttgctgaaacatcttcctttcatttattggatccattcctgataaaaaaaggaatc |
47448101 |
T |
|
| Q |
193 |
aaagaagatcatttgagtgctgagtgccattaatccagaaagaatttacttcaacgaataaccaaccttggttaatctcatcaacaactcgaaatgggca |
292 |
Q |
| |
|
|| |||| || || ||||| | | | || | ||| |||||||||||| || || ||||||||||||||| |||||||||||||||| ||||||||| |
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|
| T |
47448100 |
aatgaaggtctcttaagtgcagtctacggttgaaccaaaaagaatttactctaaagactaaccaaccttggttgatctcatcaacaactctaaatgggca |
47448001 |
T |
|
| Q |
293 |
gtttgtaagatcttgaagggaaacaagataaacaattgttgaaactgatcgctcctggaaaaccaaaattaaaggctaattag |
375 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
47448000 |
gtttgtaagatcttgaagagaaacaagataaacaatagttgaaactgatcgctcctggaaaaccaaatttaaaggttaattag |
47447918 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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