View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4780_low_84 (Length: 228)

Name: NF4780_low_84
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4780_low_84
NF4780_low_84
[»] chr4 (2 HSPs)
chr4 (7-226)||(55330465-55330684)
chr4 (7-175)||(55335948-55336116)
[»] chr2 (9 HSPs)
chr2 (66-226)||(8376188-8376348)
chr2 (66-217)||(8405547-8405698)
chr2 (66-217)||(8395874-8396025)
chr2 (66-187)||(8416781-8416902)
chr2 (66-228)||(8411656-8411818)
chr2 (66-228)||(8433754-8433916)
chr2 (66-196)||(8430839-8430969)
chr2 (90-141)||(8401365-8401416)
chr2 (9-175)||(8403633-8403799)
[»] scaffold1738 (1 HSPs)
scaffold1738 (66-187)||(20-141)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 55330684 - 55330465
Alignment:
Q  7 aaatgtatagaaattgtggtggattccttaagctgttggaagagactgttgatgaaacattggaagagaaagattttgagatgagagaaaatggagagtt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55330684 aaatgtatagaaattgtggtggattccttaagctgttggaagagactgttgatgaaacattggaagagaaagattttgagatgagagaaaatggagagtt 55330585  T
Q  107 atttgaaatgaaaatggctttgatgttgggaagaaatgtttctgagatgagagagcttgcttcaaaatcaggttcttgtcgaatgaaaggaattgatgtt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55330584 atttgaaatgaaaatggctttgatgttgggaagaaatgtttctgagatgagagagcttgcttcaaaatcaggttcttgtcgaatgaaaggaattgatgtt 55330485  T
Q  207 gatgaatttgctaacaagct 226  Q
    ||||||||||||||||||||    
T  55330484 gatgaatttgctaacaagct 55330465  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 7 - 175
Target Start/End: Complemental strand, 55336116 - 55335948
Alignment:
Q  7 aaatgtatagaaattgtggtggattccttaagctgttggaagagactgttgatgaaacattggaagagaaagattttgagatgagagaaaatggagagtt 106  Q
    ||||||||||||| |||||||||||  ||||| |||| | ||||| | ||||    ||| | || ||||||||||| || |  ||||||||||| ||| |    
T  55336116 aaatgtatagaaactgtggtggattttttaagatgtttggagagagtattgaaagcacacttgaggagaaagatttggaaaaaagagaaaatggtgagat 55336017  T
Q  107 atttgaaatgaaaatggctttgatgttgggaagaaatgtttctgagatgagagagcttgcttcaaaatc 175  Q
    |||||||||||||||||| |||||||| ||||||| |||||||||| | ||| | ||||||||||||||    
T  55336016 atttgaaatgaaaatggcattgatgttaggaagaagtgtttctgagctaagacaacttgcttcaaaatc 55335948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 226
Target Start/End: Original strand, 8376188 - 8376348
Alignment:
Q  66 ttggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaaatgtttctgagatgagagagcttg 165  Q
    |||| |||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||   |||||||||| ||| || ||| |||| || ||||    
T  8376188 ttgggagagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttg 8376287  T
Q  166 cttcaaaatcaggttcttgtcgaatgaaaggaattgatgttgatgaatttgctaacaagct 226  Q
    | |||||||||| ||||||||| ||| |||| || ||  ||||||||||||| | ||||||    
T  8376288 cctcaaaatcagcttcttgtcgcatggaaggtatcgaaattgatgaatttgccagcaagct 8376348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 66 - 217
Target Start/End: Complemental strand, 8405698 - 8405547
Alignment:
Q  66 ttggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaaatgtttctgagatgagagagcttg 165  Q
    |||| |||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||   |||||||||| ||| |||||| |||| || ||||    
T  8405698 ttgggagagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatctgagctgagggaacttg 8405599  T
Q  166 cttcaaaatcaggttcttgtcgaatgaaaggaattgatgttgatgaatttgc 217  Q
    | |||||||||| ||||| ||| ||| ||||  ||||  | |||||||||||    
T  8405598 catcaaaatcagcttcttatcgcatggaaggtgttgacatagatgaatttgc 8405547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 66 - 217
Target Start/End: Original strand, 8395874 - 8396025
Alignment:
Q  66 ttggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaaatgtttctgagatgagagagcttg 165  Q
    |||| |||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||   |||||||||| ||| || ||| |||| || ||||    
T  8395874 ttgggagagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttg 8395973  T
Q  166 cttcaaaatcaggttcttgtcgaatgaaaggaattgatgttgatgaatttgc 217  Q
    | |||||||||| ||||| ||| ||| ||||  ||||  | |||||||||||    
T  8395974 catcaaaatcagcttcttatcgcatggaaggtgttgacatagatgaatttgc 8396025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 187
Target Start/End: Complemental strand, 8416902 - 8416781
Alignment:
Q  66 ttggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaaatgtttctgagatgagagagcttg 165  Q
    |||| |||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||   |||||||||||||| || ||| |||| || | ||    
T  8416902 ttgggagagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaaatgtatcagagctgagggaacgtg 8416803  T
Q  166 cttcaaaatcaggttcttgtcg 187  Q
    |  ||||||||| |||||||||    
T  8416802 ccacaaaatcagcttcttgtcg 8416781  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 228
Target Start/End: Complemental strand, 8411818 - 8411656
Alignment:
Q  66 ttggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaaatgtttctgagatgagagagcttg 165  Q
    |||| |||||||||||| ||||  ||||||||||||||| |||||||| ||||||||||||||   |||||||||| |||  | ||| |||| || ||||    
T  8411818 ttgggagagaaagatttagagaaaagagaaaatggagagctatttgaattgaaaatggctttgcgattgggaagaagtgtcacagagctgagggaacttg 8411719  T
Q  166 cttcaaaatcaggttcttgtcgaatgaaaggaattgatgttgatgaatttgctaacaagctct 228  Q
    | |||||||||| ||||||||| ||| || | || ||  | ||||||||||| | ||||||||    
T  8411718 cctcaaaatcagcttcttgtcgcatggaaagtatcgaaatagatgaatttgccagcaagctct 8411656  T

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Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 228
Target Start/End: Complemental strand, 8433916 - 8433754
Alignment:
Q  66 ttggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaaatgtttctgagatgagagagcttg 165  Q
    |||| |||||||||||| ||||  ||||||||||||||| |||||||| ||||||||||||||   |||||||||| |||  | ||| |||| || ||||    
T  8433916 ttgggagagaaagatttagagaaaagagaaaatggagagctatttgaattgaaaatggctttgcgattgggaagaagtgtcacagagctgagggaacttg 8433817  T
Q  166 cttcaaaatcaggttcttgtcgaatgaaaggaattgatgttgatgaatttgctaacaagctct 228  Q
    | |||||||||| ||||||||| ||| || | || ||  | ||||||||||| | ||||||||    
T  8433816 cctcaaaatcagcttcttgtcgcatggaaagtatcgaaatagatgaatttgccagcaagctct 8433754  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 196
Target Start/End: Complemental strand, 8430969 - 8430839
Alignment:
Q  66 ttggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaaatgtttctgagatgagagagcttg 165  Q
    |||| |||||||||||| ||||  ||||||||||||||| ||||||||||||| |||||||||   ||||||| || ||| || ||| | || || ||||    
T  8430969 ttgggagagaaagatttagagaaaagagaaaatggagagctatttgaaatgaagatggctttgcaattgggaaaaagtgtatcagagctaagggaacttg 8430870  T
Q  166 cttcaaaatcaggttcttgtcgaatgaaagg 196  Q
    | |||||||||| ||||| ||| ||| ||||    
T  8430869 catcaaaatcagcttcttatcgcatggaagg 8430839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 8401365 - 8401416
Alignment:
Q  90 agagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaa 141  Q
    |||||||||||||| ||||||||||| ||| |||||||||  ||||||||||    
T  8401365 agagaaaatggagatttatttgaaattaaattggctttgaaattgggaagaa 8401416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 8403799 - 8403633
Alignment:
Q  9 atgtatagaaattgtggtggattccttaagctgttggaagagactgttgatgaaacattggaagagaaagattttgagatgagagaaaatggagagttat 108  Q
    ||||||||||| |||||||||||  || |||| ||||||||||| ||||| ||||   | ||||||||||||||  | |  ||||||||||  ||| | |    
T  8403799 atgtatagaaactgtggtggattttttgagcttttggaagagacagttgaagaaattattgaagagaaagatttgaataaaagagaaaatgatgaggtgt 8403700  T
Q  109 ttgaaatgaaaatggctttgatgttgggaagaaatgtttctgagatgagagagcttgcttcaaaatc 175  Q
    |||| ||||| || || |||   |||||||||| |||     |||||||||||||||| ||||||||    
T  8403699 ttgagatgaagattgcattgcaattgggaagaagtgtaatgcagatgagagagcttgcctcaaaatc 8403633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1738 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold1738
Description:

Target: scaffold1738; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 66 - 187
Target Start/End: Original strand, 20 - 141
Alignment:
Q  66 ttggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaaatgtttctgagatgagagagcttg 165  Q
    |||| |||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||   |||||||||| ||| || ||| |||| || ||||    
T  20 ttgggagagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttg 119  T
Q  166 cttcaaaatcaggttcttgtcg 187  Q
    | |||||||||| |||||||||    
T  120 catcaaaatcagcttcttgtcg 141  T

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