View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4780_low_9 (Length: 453)
Name: NF4780_low_9
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_low_9 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 15 - 433
Target Start/End: Complemental strand, 27105795 - 27105377
Alignment:
| Q |
15 |
acctgtgtgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttctg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27105795 |
acctgtgtgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttctg |
27105696 |
T |
|
| Q |
115 |
aatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27105695 |
aatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggta |
27105596 |
T |
|
| Q |
215 |
taaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattgt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27105595 |
taaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattgt |
27105496 |
T |
|
| Q |
315 |
aactggtattagacgcaagttgaaggattttgaacctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcgag |
414 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27105495 |
agctggtattagacgcaagttgaaggattttgaacctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcgag |
27105396 |
T |
|
| Q |
415 |
ctcgatgaaaggccactct |
433 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
27105395 |
ctcgatgaaaggccactct |
27105377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 15 - 433
Target Start/End: Complemental strand, 27098796 - 27098378
Alignment:
| Q |
15 |
acctgtgtgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttctg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27098796 |
acctgtgtgggaaagagagagacttattggatcaataactgaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttctg |
27098697 |
T |
|
| Q |
115 |
aatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggta |
214 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||| | || ||||||||| |||||| |||||||||||| |||||||||||||||||| || |
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| T |
27098696 |
aatcaacacaacactacagttatgaagcaatattgttttaatattgatggtgaaatgataacaaggcttaagttgagcttgatgaaggaaagtggaaata |
27098597 |
T |
|
| Q |
215 |
taaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattgt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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|
| T |
27098596 |
taaggttcacaacttttgaatcaattgcaggttatgtttggagatcaagagcaagagccttaaaacttaacagcaatggtgaaacagtactgaccattgt |
27098497 |
T |
|
| Q |
315 |
aactggtattagacgcaagttgaaggattttgaacctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcgag |
414 |
Q |
| |
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| | |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
27098496 |
agcaggtattagacgcaacttgaaggattttgatcctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagtgag |
27098397 |
T |
|
| Q |
415 |
ctcgatgaaaggccactct |
433 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
27098396 |
ctcgatgaaaggccactct |
27098378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 14 - 377
Target Start/End: Complemental strand, 27086131 - 27085768
Alignment:
| Q |
14 |
aacctgtgtgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttct |
113 |
Q |
| |
|
||||||||||||||||||| | || ||||||||||| ||| |||| | |||||| || | || ||| || ||||||||| || ||||||| ||| | |
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|
| T |
27086131 |
aacctgtgtgggaaagagaaaaacaagttggatcaatagctatacaaacttttccacaatgtcccatggaccgagaatctgtttcactttcaccctttgt |
27086032 |
T |
|
| Q |
114 |
gaatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggt |
213 |
Q |
| |
|
|||||| | || ||||| | || || ||||||||||||| || |||||||||||| ||| || |||||||||||||||||||| |||| || | | |
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|
| T |
27086031 |
aaatcaaaataatactacgataattaaacaatattgttttaaagtagagggtgaaatgataagaagacttaagttgagtttgatgaatgaaaatgaaaat |
27085932 |
T |
|
| Q |
214 |
ataaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattg |
313 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| | ||||||| ||||| | | ||||||| |
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|
| T |
27085931 |
ataaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttaaaagcaatggtttaacagcgctaaccattg |
27085832 |
T |
|
| Q |
314 |
taactggtattagacgcaagttgaaggattttgaacctttacctaatggttattatgggaattc |
377 |
Q |
| |
|
| ||||| ||||||||| || ||||||| ||| |||||||||| || |||||||||||||| |
|
|
| T |
27085831 |
cagttggtagtagacgcaacttaaaggattatgatactttacctaaagggtattatgggaattc |
27085768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 14 - 292
Target Start/End: Complemental strand, 27063002 - 27062730
Alignment:
| Q |
14 |
aacctgtgtgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttct |
113 |
Q |
| |
|
||||||||||||||||||| | | ||||| ||||||||| ||||||||||||| || |||| ||| ||| |||||||||||||||||||| ||| | |
|
|
| T |
27063002 |
aacctgtgtgggaaagagaaaaccaagttggaacaataactacacaaccatttccacaatgccccatggacagagaatctgttgcattttcaccctttgt |
27062903 |
T |
|
| Q |
114 |
gaatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggt |
213 |
Q |
| |
|
||||||| || |||| | |||| ||| ||||||||||||| || ||||| |||| | |||||| |||||||||||||||||||| |||| | |
|
|
| T |
27062902 |
gaatcaacctaatactaaaattattaagcaatattgttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaacgaaa------at |
27062809 |
T |
|
| Q |
214 |
ataaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatg |
292 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| || ||||| |
|
|
| T |
27062808 |
ataaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttagcagcaatg |
27062730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 14 - 433
Target Start/End: Complemental strand, 27070075 - 27069656
Alignment:
| Q |
14 |
aacctgtgtgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttct |
113 |
Q |
| |
|
||||||||||||||||||| | || ||||||||||| ||| |||||| |||||| || | || ||| ||| ||||||||||||||||||| ||| | |
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|
| T |
27070075 |
aacctgtgtgggaaagagaaacacaagttggatcaatagctatacaaccttttccacaatgtcccatggacagaaaatctgttgcattttcaccctttgt |
27069976 |
T |
|
| Q |
114 |
gaatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggt |
213 |
Q |
| |
|
||||||| || |||||| |||| ||| |||||| |||||| || ||||| |||| | |||||| |||||||||||||||||||| |||||| | |
|
|
| T |
27069975 |
gaatcaaactaatactacaattattaagcaatattcttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaataaaagtgaaaaa |
27069876 |
T |
|
| Q |
214 |
ataaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattg |
313 |
Q |
| |
|
||| |||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||| || ||||| | ||||| || ||| || |
|
|
| T |
27069875 |
atagggtttacaacttttgaagttcttgcaggttatgtgtggaggtcaagagcaagagccttaaagcttagcagcaatgataaaacaatgctgaatatgt |
27069776 |
T |
|
| Q |
314 |
taactggtattagacgcaagttgaaggattttgaacctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcga |
413 |
Q |
| |
|
|| |||||| ||||| || |||| ||||||||| ||||||| || || ||||| |||||||| | |||||||| ||| |||||||| || || |
|
|
| T |
27069775 |
tagttggtatgagacgtaacttgatggattttgatactttaccgaaagggtattacgggaattctaccatggatgcaaaagttgttttaaaagtgagtga |
27069676 |
T |
|
| Q |
414 |
gctcgatgaaaggccactct |
433 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
27069675 |
gctcgatgaaatgccactct |
27069656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 14 - 313
Target Start/End: Complemental strand, 27041653 - 27041354
Alignment:
| Q |
14 |
aacctgtgtgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttct |
113 |
Q |
| |
|
||||||||||||||||||| | || || |||||||| ||| | |||| |||||| || | || ||| || ||||||||| || ||||||| ||| | |
|
|
| T |
27041653 |
aacctgtgtgggaaagagaaaaacaagttcgatcaatagctataaaaccttttccacaatgtcccatggaccgagaatctgtttcactttcaccctttgt |
27041554 |
T |
|
| Q |
114 |
gaatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggt |
213 |
Q |
| |
|
|||||| | || ||||| | || || ||||||||||||| || |||||||||||| ||||| ||||| |||||||||||||| ||| || | |
|
|
| T |
27041553 |
aaatcaaaataatactacgataattaaacaatattgttttaaagtagagggtgaaatgataacaggacttaaattgagtttgatgaataaaaatgaaaaa |
27041454 |
T |
|
| Q |
214 |
ataaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattg |
313 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
27041453 |
atgaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttaacagcaatggtgaaacagtgttgaccattg |
27041354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 214 - 377
Target Start/End: Complemental strand, 27056765 - 27056603
Alignment:
| Q |
214 |
ataaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattg |
313 |
Q |
| |
|
|||||||||||||||||||| | | ||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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|
| T |
27056765 |
ataaggttcacaacttttgagt-acttgcaggttatgtgtagaggtcaagagcaagagccttaaaacttaacagcaatggtgaaacagtgctgaccattg |
27056667 |
T |
|
| Q |
314 |
taactggtattagacgcaagttgaaggattttgaacctttacctaatggttattatgggaattc |
377 |
Q |
| |
|
| ||||||||||||||| ||| |||||| ||| |||||||||| || || ||||| ||||| |
|
|
| T |
27056666 |
cagttggtattagacgcaacttggaggattatgatactttacctaaagggtaatatggaaattc |
27056603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 433
Target Start/End: Complemental strand, 27045834 - 27045647
Alignment:
| Q |
246 |
ttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattgtaactggtattagacgcaagttgaaggatttt |
345 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||| ||||||||| ||||| |||||| || || |||||||||||||| |||| | || | |
|
|
| T |
27045834 |
ttatgtgtggaggtcaagagcaagagccttacaacttagcaacaatggaaaaacaatgttgaatatgttagttggtattagacgcagcatgaaaggttat |
27045735 |
T |
|
| Q |
346 |
gaacctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcgagctcgatgaaaggccactct |
433 |
Q |
| |
|
|| ||||| |||| || |||||||| ||| | ||| |||| ||| ||||||||||||||| |||||| |||||| |||||||| |
|
|
| T |
27045734 |
gatcctttgcctatagggtattatggtaatactactgtggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactct |
27045647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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