View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4781_high_2 (Length: 410)
Name: NF4781_high_2
Description: NF4781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4781_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 4327684 - 4327285
Alignment:
| Q |
1 |
agatagctaggtatataaggaacaatatcctcctcactaaagcctgtgcctctaaaagcagtataacagttgtgattgaaatcttcatttaaatcaaatt |
100 |
Q |
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| T |
4327684 |
agatagctaggtatataaggaacaacatcctcctcactaaagcctgtgcctctaaaagcagtataacagttgtgattgaaatcttcatttaaatcaaatt |
4327585 |
T |
|
| Q |
101 |
gatgatattttgattcaaaattaggctgcctatccgagttgttagagtatttactgggagctcctaagatggagtgtatgtactcatccattaataggga |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4327584 |
gatgatattttgattcaaaattaggccgcctatccgagtttttagttgatttactggtagctcctaagatggagtgtatttactcatccattaataggga |
4327485 |
T |
|
| Q |
201 |
atcatgttgatgttggctctggtttacatttaaaccaagaaactcattacaatcacatgtgagctcaaaatattgacaagcattgaaataatgattaaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4327484 |
atcatgttgatgttggctctggtttacatttaaaccaagaaactcattacaatcacatgtgagatcaaaatattgacaagcattgaaataatgattaaaa |
4327385 |
T |
|
| Q |
301 |
ctatgatgcataacataagaacaacttgggctttgagttgttggtgagaaaattggtattaactaaggaaagactgaaccatcaaatccttgctcttcat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4327384 |
ctatgatgcataacataagaacaacttgggctttgagttgttggtgagaaaattggtattaactaaggaaagactgaaccatcaaatccttgctcttcat |
4327285 |
T |
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