View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4781_low_1 (Length: 514)
Name: NF4781_low_1
Description: NF4781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4781_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 34616461 - 34616959
Alignment:
| Q |
1 |
gcagcaactgcaggagccctttacctcatcttcaaaccaaagcttcccaatcactcagttgatacactgaggataagtgatctgagacttaactttgact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34616461 |
gcagcaactgcaggagccctttacctcatcttcaaaccaaagcttcccaattactcagttgatacactgaggataagtgatctgagacttaactttgact |
34616560 |
T |
|
| Q |
101 |
tgagtctgtatgcaaagtttgatgtgaagatcacagcaaccaacccaaacaagaagattggtatttactatgagaaaggagggaagttgagtgtattgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34616561 |
tgagtctgtatgcaaagtttgatgtgaagatcacagcaaccaacccaaacaagaagattggtatttactatgagaaaggagggaagttgagtgtattgta |
34616660 |
T |
|
| Q |
201 |
cacaaacacaaagctttgtgaagggtctttacctaaattctaccaaggtcatcagnnnnnnncagtgcttaatgtgtcgttaacaggtcaagttcagtct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34616661 |
cacaaacacaaagctttgtgaagggtctttacctaaattctaccaaggtcatcagaacaaaacagtgcttaatgtgtcgttaacaggtcaagttcagtct |
34616760 |
T |
|
| Q |
301 |
ggaaacacgttaatggcggctttgcagcagcaacagcagacaggaagaattccgttggatctcaatatccatgcaccaattgctatcaaatttgggaggt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34616761 |
ggaaacacgttaatggcggctttgcagcagcaacagcagacaggaagaattccgttggatctcaatatccatgcaccaattgctatcaaatttgggaggt |
34616860 |
T |
|
| Q |
401 |
tgaagttgaagaaggtgaaagttttgggtcgatgtcaattggtggtcgatagcttatcgtctaataatcttgtaagcatcaaggctagcaactgtaact |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34616861 |
tgaagttgaagaaggtgaaagttttgggtcgatgtcaattggtggtcgatagcttatcgtctaataatcttgtaagcatcaaggctagcaactgtaact |
34616959 |
T |
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