View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4781_low_3 (Length: 396)
Name: NF4781_low_3
Description: NF4781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4781_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 4 - 378
Target Start/End: Original strand, 18569842 - 18570216
Alignment:
| Q |
4 |
agtagttcataacaattcttctagggcatgagactacatcctaatagtcctaaatagaacagagaaattgaagtgtttcatatatggatcccaatggaag |
103 |
Q |
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| T |
18569842 |
agtagttcataacaattcttctagggcatgagactacatcctaatggtcctaaatagaacagagaaattgaagtgtttcatatatggatcccaatggaag |
18569941 |
T |
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| Q |
104 |
ccaatttcatctcctttctttaatccccttcttctaacaaaatcatagaaccaattgtcaaagaaaccatagtttcctgaagaaacacatctcttatgaa |
203 |
Q |
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| T |
18569942 |
ccaatttcatctcctttctttaatccccttcttctaacaaaatcatagaaccaattgtcaaagaaaccatagtttcctgaagaaacacatctcttatgaa |
18570041 |
T |
|
| Q |
204 |
ccagaacatgcatggattcggtgtcataatcaaaaatcctaaccaaagctcctttttcaagatcagcaccagcactcaacacaggcaacaccaattcctc |
303 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18570042 |
ccagaacatgcatggattcagtgtcataatcaaaaatcctaaccaaagctcctctttcaagatcagcaccagcactcaacacaggcaacaccaattcctc |
18570141 |
T |
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| Q |
304 |
taccaaatctttgtccaacaatagcttatcaacaatatcatcctcttggagcaccttcttgatcttccaaggatc |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18570142 |
taccaaatctttgtccaacaatagcttatcaacaatatcatcctcttggagcaccttcttgatcttccaaggatc |
18570216 |
T |
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