View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4782-Insertion-1 (Length: 827)
Name: NF4782-Insertion-1
Description: NF4782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4782-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 708; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 708; E-Value: 0
Query Start/End: Original strand, 7 - 746
Target Start/End: Complemental strand, 27947327 - 27946588
Alignment:
| Q |
7 |
agttggcccctacatttccattttgcaaaactttttcattgccaacccctcatgtcttctaatgcttattgcattttgtcattaaaattgattttgatac |
106 |
Q |
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| T |
27947327 |
agttggcccctacatttccattttgcaaaactttttcattgccaacccctcatgtcttctaatgcttattgcattttgtcattaaaattgattttgatac |
27947228 |
T |
|
| Q |
107 |
attgtttcgtagcagaacggcgtggaacttcccttcgaaactctgttacacttttcagatcgtcgttcttagaacctttgcaaaaagcctgcaaggtatg |
206 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27947227 |
attgtttcgtagcagaatggcgtggaacttcccttcgaaactctgttacacttttcagatcgtcgttcttagaatctttgcaaaaagcctgcaaggtatg |
27947128 |
T |
|
| Q |
207 |
aaacatttttaaattgtttctgtagtaaattttgatcgaacagaaataatttaatgtgagaatgctaaaaattgtgattcctttgtttctcctttaagta |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
27947127 |
aaacatttttaaattgtttctgtagtaaattttgatcgaacagaaataattttatgtgagaatgctaaaaattgtgattcctttgtttctcatttaagca |
27947028 |
T |
|
| Q |
307 |
tgcacagattcttccctgccgtattcttctagtgtctgttaaccaaattatgttatgttgatgctgctatttgttaatagtttgatttgataataagaat |
406 |
Q |
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| T |
27947027 |
tgcacagattcttccctgccgtattcttctagtgcctgttaaccaaattatgttatgttgatgctgctatttgttaatagtttgatttgataataagaat |
27946928 |
T |
|
| Q |
407 |
atataaataagattccgaactatctatccgtcacaactattgttgcaggaggagatagacatatcctataatttaaagttgcagcagtcaaagaactcca |
506 |
Q |
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| T |
27946927 |
atataaataagattccgaactatctatccgtcacaactattgttgcaggaggagatagacatatcctataatttaaagttgcagcagtcaaagaactcca |
27946828 |
T |
|
| Q |
507 |
taagttggtagtgcaatgcactctttattggtcatgtagagcttttgaggtcaaatggggtcacaacatttgcagttgtctcaattagtcccttatgaca |
606 |
Q |
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| T |
27946827 |
taagttggtagtgcaatgcactctttattggtcatgtagagcttttgaggtcaaatggggtcaaaacatttgcagttgtctcaattagtcccttgtgaca |
27946728 |
T |
|
| Q |
607 |
aagcaagatagtgaatgtttgttttatttatagaaggggtttgattgagtcatgaattaatatacaaagcaacattgtttattggttattagcagaaatg |
706 |
Q |
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| T |
27946727 |
aagcaagatagtgaatgtttgttttatttatagaaggggtttgattgagtcatgaattaatatacaaagcaacattgtttattggttattagcagaaatg |
27946628 |
T |
|
| Q |
707 |
ttctaatcgatgaacaagacaaaaaacactttatcaacta |
746 |
Q |
| |
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| T |
27946627 |
ttctaatcgatgaacaagacaaaaaacactttatcaacta |
27946588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 600 - 732
Target Start/End: Complemental strand, 27439721 - 27439590
Alignment:
| Q |
600 |
tatgacaaagcaagatagtgaatgtttgttttatttatagaaggggtttgattgagtcatgaattaatatacaaagcaacattgtttattggttattagc |
699 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||| || |
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| T |
27439721 |
tatgacaaagcaagatagtgaatgtttgttttgtttatagaaggggtttgattgagtcatgaattaatatagcaagcaacattgtttgtt-gttattggc |
27439623 |
T |
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| Q |
700 |
agaaatgttctaatcgatgaacaagacaaaaaa |
732 |
Q |
| |
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|||||| ||||||| |||||||||||||||||| |
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| T |
27439622 |
agaaatattctaatggatgaacaagacaaaaaa |
27439590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 741 - 826
Target Start/End: Complemental strand, 27946566 - 27946480
Alignment:
| Q |
741 |
caactagttcttacaaacatgcatctccaccataaaacatcatcatatattctttgat-gcattcctcttatcagtcttggctagcc |
826 |
Q |
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| T |
27946566 |
caactagttcttacaaacatgcatctccaccataaaacatcatcatatattctttgatggcattcctcttatcagtcttggctagcc |
27946480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 594 - 746
Target Start/End: Complemental strand, 27442503 - 27442350
Alignment:
| Q |
594 |
gtcccttatgacaaagcaagatagtgaatgtttgttttatttatagaaggggtttgattgagtcatgaattaatatacaaagcaacattgtttattggtt |
693 |
Q |
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||||| ||||| ||| |||| ||||||||||||||||| |||||| ||||||||||||||||| ||||| ||||||| |||||||||| ||| |||| | |
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| T |
27442503 |
gtcccctatgaaaaatcaagttagtgaatgtttgttttgtttatacaaggggtttgattgagtgatgaactaatatagcaagcaacattttttgttggct |
27442404 |
T |
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| Q |
694 |
attagcagaaatgttctaatcgatgaacaagacaaaaaacac-tttatcaacta |
746 |
Q |
| |
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||| |||||||||||||||| | |||||||||||||||| || ||||||||||| |
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| T |
27442403 |
attggcagaaatgttctaatggttgaacaagacaaaaaaaacttttatcaacta |
27442350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 8e-45; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 81 - 312
Target Start/End: Original strand, 28219252 - 28219488
Alignment:
| Q |
81 |
tttgtcattaaaattgattttgatacattgtttcgtagcagaacggcgtggaacttcccttcgaaactctgttacacttttcagatcgtcgttcttagaa |
180 |
Q |
| |
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|||||| |||||| ||||||| ||| ||||||| |||||||| || |||||||||||||| ||||||| ||||| ||||||||||| |||||||||||| |
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| T |
28219252 |
tttgtcgttaaaagtgattttaataaattgtttggtagcagagaggagtggaacttcccttggaaactccgttacgcttttcagatcatcgttcttagaa |
28219351 |
T |
|
| Q |
181 |
cctttgcaaaaagcctgcaaggtatgaaacatttttaaattgtttctgtagtaaattttgatcgaacag-----aaataatttaatgtgagaatgctaaa |
275 |
Q |
| |
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||||| ||||||| | |||||||||||||||||| ||||||||||| ||||||||| ||||| ||||| | | |||| |||||||||||||||| |
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| T |
28219352 |
cctttacaaaaaggcagcaaggtatgaaacatttcaaaattgtttctatagtaaattctgatcaaacagattttattttattttatgtgagaatgctaaa |
28219451 |
T |
|
| Q |
276 |
aattgtgattcctttgtttctcctttaagtatgcaca |
312 |
Q |
| |
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|| | ||||||||||||| || ||||| ||||||| |
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| T |
28219452 |
aaccgcgattcctttgtttttcatttaaacatgcaca |
28219488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 450 - 546
Target Start/End: Original strand, 28219705 - 28219801
Alignment:
| Q |
450 |
tgcaggaggagatagacatatcctataatttaaagttgcagcagtcaaagaactccataagttggtagtgcaatgcactctttattggtcatgtaga |
546 |
Q |
| |
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|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | || | |||||||||||| |
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| T |
28219705 |
tgcaggaggagatagaaagatcctataatttaaagttgcagcagtcaaagaactccataggttggtagtgcaatgcattattgactggtcatgtaga |
28219801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 480 - 546
Target Start/End: Original strand, 28215400 - 28215466
Alignment:
| Q |
480 |
taaagttgcagcagtcaaagaactccataagttggtagtgcaatgcactctttattggtcatgtaga |
546 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||| | |||||||||||| |
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| T |
28215400 |
taaagttgcagcagtcaaagaactccataggttggtagtgcaatgcattcttgactggtcatgtaga |
28215466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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