View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4782-Insertion-3 (Length: 546)
Name: NF4782-Insertion-3
Description: NF4782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4782-Insertion-3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 12 - 546
Target Start/End: Original strand, 47826441 - 47826974
Alignment:
| Q |
12 |
tttgtatttggtattatacattaattagaaaacatgttgtctaggaaggctagtgaagactctcatggccaagactcttcttacttcctaggatggcaag |
111 |
Q |
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| T |
47826441 |
tttgtatttggtataatacattaattagaaaacatgttgtctaggaaggctagtgaagactctcatggccaagactcttcttacttcctaggatggcaag |
47826540 |
T |
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| Q |
112 |
agtacgagaagaatccctatcacccaattcataatcccacgggaatcattcagatgggacttgcggagaatcaggtaaattagtttgtttattattataa |
211 |
Q |
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| T |
47826541 |
agtacgagaagaatccctatcacccaattcataatcccacgggaatcattcagatgggacttgcggagaatcaggtaaattagtttgtttattattataa |
47826640 |
T |
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| Q |
212 |
ctcaagtatatttataatgaatccatgctgctacaagtatatatatagatagagattgaaaaaatgaaactattaagatgtcccgtacgggggacacaaa |
311 |
Q |
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| T |
47826641 |
ctcaagtatatttataatgactccatgctgctacaagtatatatatagatagagattgaaaaaatgaaactattaagatgtcccgtacgggggacacaaa |
47826740 |
T |
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| Q |
312 |
aggatagtatgtca---annnnnnnnncttcttcaccaaagttattattatatgctaggactaaacatttaaaattatcattttctcttatatctatctg |
408 |
Q |
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| T |
47826741 |
aggatagtatgtcactttttttttttttttcttcaccaaagttattattatatgctaggactaaacatttaaaattatcattttctctta----tatctg |
47826836 |
T |
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| Q |
409 |
gtccctaataaactatcaaaatactcagtgagctaacattatgttaaccatttacacaataatactagtaatagttcagagtatattacttattgattta |
508 |
Q |
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| T |
47826837 |
gtccctaataaactatcaaaatactcagtgagctaacattatgttaaccatttacacaataataccagtaatagttcagagtatattacttattgattta |
47826936 |
T |
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| Q |
509 |
atgctaactttatgttttagtttgttagttcatgctaa |
546 |
Q |
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| T |
47826937 |
atgctaactttatgttttagtttgttagttcatgctaa |
47826974 |
T |
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Back To:
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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 40207046 - 40207099
Alignment:
| Q |
74 |
tcatggccaagactcttcttacttcctaggatggcaagagtacgagaagaatcc |
127 |
Q |
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| T |
40207046 |
tcatggccaagactcctcatacttcttaggatgggaagaatacgagaaaaatcc |
40207099 |
T |
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