View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4782-Insertion-4 (Length: 524)

Name: NF4782-Insertion-4
Description: NF4782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4782-Insertion-4
NF4782-Insertion-4
[»] chr1 (5 HSPs)
chr1 (8-203)||(17115032-17115227)
chr1 (399-524)||(17115523-17115648)
chr1 (15-91)||(13062257-13062333)
chr1 (357-401)||(17115450-17115494)
chr1 (7-74)||(41035291-41035358)
[»] chr8 (5 HSPs)
chr8 (12-128)||(27787094-27787210)
chr8 (19-81)||(8831551-8831613)
chr8 (24-94)||(28226050-28226120)
chr8 (15-68)||(400044-400097)
chr8 (12-64)||(29368878-29368930)
[»] chr3 (6 HSPs)
chr3 (12-136)||(51524555-51524680)
chr3 (15-91)||(3395892-3395968)
chr3 (15-63)||(31163398-31163446)
chr3 (12-64)||(16892870-16892922)
chr3 (15-90)||(29346559-29346634)
chr3 (24-61)||(21850822-21850859)
[»] chr2 (1 HSPs)
chr2 (16-89)||(30179898-30179971)
[»] chr7 (2 HSPs)
chr7 (16-74)||(19408148-19408206)
chr7 (15-84)||(26449814-26449883)
[»] chr4 (6 HSPs)
chr4 (15-128)||(6659192-6659305)
chr4 (23-91)||(19852209-19852277)
chr4 (15-91)||(37049758-37049834)
chr4 (12-64)||(12580102-12580154)
chr4 (23-91)||(16594096-16594164)
chr4 (24-54)||(16832477-16832507)
[»] chr6 (2 HSPs)
chr6 (15-91)||(25167601-25167677)
chr6 (15-64)||(10989776-10989825)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 17115032 - 17115227
Alignment:
Q  8 gaaccatgaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttgcggtataggaacatttccatacattg 107  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17115032 gaaccatgaaccaagatttggcttgaagagagcttgtcatttgtcaaactagcatagctggcagttacaagttgcggtataggaacatttgcatacattg 17115131  T
Q  108 attgatgggaggtgtttttgtaagagtaacaagtgcgataaataaactggcgacaacacgtcaactgaatccaaagccttagacgtagacacagaa 203  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  17115132 attgatgagaggtgtttttgtaagagtaacaagtgcgataaataaactggcgacaacacatcaactgaatccaaagccttagatgtagacacagaa 17115227  T

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Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 399 - 524
Target Start/End: Original strand, 17115523 - 17115648
Alignment:
Q  399 atctttgttcgaatacatatgatctaattaacaccagatcaataaactagaagtgaatccaaaatgcctataatatgtagttttacttgtgttaatcatt 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||  |||| |||||||||||||||||||||||||||    
T  17115523 atctttgttcgaatacatatgatctaattaacaccagatcaataaactagaatttaatccaaaatgtgtatattatgtagttttacttgtgttaatcatt 17115622  T
Q  499 ttccaaaataagttgtatcaatcata 524  Q
    || |||||||||||||||||||||||    
T  17115623 tttcaaaataagttgtatcaatcata 17115648  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 13062257 - 13062333
Alignment:
Q  15 gaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttgcggtatagga 91  Q
    ||||||||||||||||||||||||||||||||  ||||||| |||||||||||| ||||| | ||||||| ||||||    
T  13062257 gaaccaagatttggcttgaagggagcttgtcaactgtcaaattagcatagctggtagttataggttgcggcatagga 13062333  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 357 - 401
Target Start/End: Original strand, 17115450 - 17115494
Alignment:
Q  357 taatatcatcggagtgttacctccgccatgagctatcatagcatc 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  17115450 taatatcatcggagtgttacctccgccatgagctatcatagcatc 17115494  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 41035291 - 41035358
Alignment:
Q  7 agaaccatgaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagtta 74  Q
    |||| |||||||||| ||||||||||||||||| |||||||||||||||||| |||||| || |||||    
T  41035291 agaagcatgaaccaatatttggcttgaagggagtttgtcacttgtcaaactatcatagcgggtagtta 41035358  T

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Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 27787094 - 27787210
Alignment:
Q  12 catgaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttgcggtataggaacatttccatacattgattg 111  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||| |||||| || ||||||| | ||||| |||| |||| || || |||| |||||    
T  27787094 catgaaacaagatttggcatgaagggagcttgtcacttgtcaaactatcatagcaggtagttacaggctgcggcatagaaacaattgcagacatagattg 27787193  T
Q  112 atgggaggtgtttttgt 128  Q
    ||| |||||||||||||    
T  27787194 atgagaggtgtttttgt 27787210  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 8831551 - 8831613
Alignment:
Q  19 caagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttg 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||    
T  8831551 caagatttggcttgaagggagcttgtcacttgtcaaactagcatagttggtagttacaggttg 8831613  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 28226050 - 28226120
Alignment:
Q  24 tttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttgcggtataggaaca 94  Q
    |||||| |||||||| ||| ||||||||||||||||||||| ||| ||||||| ||||||| |||||||||    
T  28226050 tttggcatgaagggatcttttcacttgtcaaactagcatagttggtagttacatgttgcggcataggaaca 28226120  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 400044 - 400097
Alignment:
Q  15 gaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctgg 68  Q
    |||||||  ||||||||||||| ||| |||| ||||||||||||||||||||||    
T  400044 gaaccaaagtttggcttgaaggtagcgtgtctcttgtcaaactagcatagctgg 400097  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 29368930 - 29368878
Alignment:
Q  12 catgaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatag 64  Q
    ||||||||||  ||||||||||||||||||| |||  ||||||||||||||||    
T  29368930 catgaaccaaagtttggcttgaagggagcttatcagctgtcaaactagcatag 29368878  T

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Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 51524680 - 51524555
Alignment:
Q  12 catgaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttgcggtataggaacatttccatacattgattg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||| | ||||| |||| |||| || || || | |||||    
T  51524680 catgaaccaagatttggcttgaagggagcttgtcacttgtcaaactatcatagcgggtagttacaggctgcggcatagaaacagttgcagacgtagattg 51524581  T
Q  112 atgggaggtgtttttgt-aagagtaa 136  Q
    ||  || |||||||||| ||||||||    
T  51524580 ataagatgtgtttttgtcaagagtaa 51524555  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 3395892 - 3395968
Alignment:
Q  15 gaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttgcggtatagga 91  Q
    ||||||| |||||||||||||||||||||  | ||||||||||||||||||| | ||||| |  |||||||||||||    
T  3395892 gaaccaacatttggcttgaagggagcttgctatttgtcaaactagcatagctagtagttatagcttgcggtatagga 3395968  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 31163398 - 31163446
Alignment:
Q  15 gaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcata 63  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  31163398 gaaccaaggtttggtttgaagggagcttgtcacttgtcaaactagcata 31163446  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 16892922 - 16892870
Alignment:
Q  12 catgaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatag 64  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||||| |||||    
T  16892922 catgaaccaaattttggtttgaagggagcttgtcacttgtcaaactatcatag 16892870  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 29346634 - 29346559
Alignment:
Q  15 gaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttgcggtatagg 90  Q
    |||||||| |||||||||||||||||||||||  |||||||  ||||||||||| || || | ||||||| |||||    
T  29346634 gaaccaaggtttggcttgaagggagcttgtcagctgtcaaataagcatagctggtaggtataggttgcggcatagg 29346559  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 21850822 - 21850859
Alignment:
Q  24 tttggcttgaagggagcttgtcacttgtcaaactagca 61  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  21850822 tttggcttgaacggagtttgtcacttgtcaaactagca 21850859  T

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Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 30179971 - 30179898
Alignment:
Q  16 aaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttgcggtatag 89  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||||||||| ||||||||||||||| ||||    
T  30179971 aaccaagatttgtcttgaagggagcttgtcacttgttcaactagcatagctggtagttacaagttgcggcatag 30179898  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 19408148 - 19408206
Alignment:
Q  16 aaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagtta 74  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||    
T  19408148 aaccaagatttggcttgaagggagcttgtcagttgtcaaattagcatagctggtagtta 19408206  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 26449814 - 26449883
Alignment:
Q  15 gaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttgcgg 84  Q
    |||||||| ||||| ||||||||||||||||||||||||||||| |||||  || ||||||| |||||||    
T  26449814 gaaccaagttttggtttgaagggagcttgtcacttgtcaaactatcatagtaggtagttacaggttgcgg 26449883  T

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Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 6659192 - 6659305
Alignment:
Q  15 gaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttgcggtataggaacatttccatacattgattgatg 114  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||| ||   ||||||| | ||||  |||  || | || ||||||| ||||||||    
T  6659192 gaaccaagatttggcttgaagagagcttgtcacttatcaaactagcatatctcatagttacagggtgcgacataaaaagagttgcatacatagattgatg 6659291  T
Q  115 ggaggtgtttttgt 128  Q
     |||||||||||||    
T  6659292 agaggtgtttttgt 6659305  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 19852277 - 19852209
Alignment:
Q  23 atttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttgcggtatagga 91  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||| ||||||| |||| || ||||||    
T  19852277 atttggcttgaagggtgcttgtcacttgtcaaactagcataactggtagttacaggttgaggcatagga 19852209  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 37049834 - 37049758
Alignment:
Q  15 gaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttgcggtatagga 91  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||| | ||||| | |||| || ||||||    
T  37049834 gaaccaagatttggcttgaagggagcttgtcaggtgtcaaactagcatagctagtagttataggttgaggcatagga 37049758  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 12580102 - 12580154
Alignment:
Q  12 catgaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatag 64  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||||| |||||    
T  12580102 catgaaccaaattttggtttgaagggagcttgtcacttgtcaaactatcatag 12580154  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 16594096 - 16594164
Alignment:
Q  23 atttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttgcggtatagga 91  Q
    ||||||||||| ||| ||||||||||||||||||||||||| |||| | ||||| |||| || ||||||    
T  16594096 atttggcttgatgggtgcttgtcacttgtcaaactagcataactggtaattacaggttgaggcatagga 16594164  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 54
Target Start/End: Original strand, 16832477 - 16832507
Alignment:
Q  24 tttggcttgaagggagcttgtcacttgtcaa 54  Q
    |||||||||||||||||||||||||||||||    
T  16832477 tttggcttgaagggagcttgtcacttgtcaa 16832507  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 25167677 - 25167601
Alignment:
Q  15 gaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttgcggtatagga 91  Q
    ||||||||||||| ||||||||||||||||||  |||||||||||||||||| | ||||| | |||| || ||||||    
T  25167677 gaaccaagatttgacttgaagggagcttgtcaggtgtcaaactagcatagctagtagttataggttgaggcatagga 25167601  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 10989825 - 10989776
Alignment:
Q  15 gaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatag 64  Q
    |||||||  ||||| ||||||||||||||||| |||||||||||||||||    
T  10989825 gaaccaaagtttggtttgaagggagcttgtcaattgtcaaactagcatag 10989776  T

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