View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4782_low_1 (Length: 531)
Name: NF4782_low_1
Description: NF4782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4782_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 20 - 390
Target Start/End: Original strand, 10367130 - 10367500
Alignment:
| Q |
20 |
tcaatgtgtcaaaatgtagtgtcatgattcaggaatgccactagagatgggaaagaataaacaacctacagaatcaagtgttcgtgaccccgaaaaaaga |
119 |
Q |
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| T |
10367130 |
tcaatgtgtcaaaatgtagtgtcaggattcaggaatgccactagagatgggaaagaataaacaacctacggaatcaagtgttcgtgaccctgaaaaaaga |
10367229 |
T |
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| Q |
120 |
gaagaaacctctcttgaatgtttttccccgtttggctttgggatgaaggagtggttttggaagaggcaacacaacccaaagaaatgtattgaaaaagtgc |
219 |
Q |
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| T |
10367230 |
gaagaaacttctgttaaatgtttttccccgtttggcttcggggtgaaggagtggttttggaagaggcaacacaacccaaagaaatgtattgaaaaagtgc |
10367329 |
T |
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| Q |
220 |
atgaaatctacactaaggaatgcgttgaagtagagtctggactctttcttcttcctgatgacattcttgaattgtgtttggatcgtcttccattcgaagg |
319 |
Q |
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| T |
10367330 |
atgaaatctacacaaaggaatgcgttgaagtagagtctggactctttcttcttcctgatgacattcttgaattgtgtttggatcgtcttccattcgaagg |
10367429 |
T |
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| Q |
320 |
tctcaagaatgttaggcttgtttgcaagaattgaagttccttccttaccactgagagaatccttcaaataa |
390 |
Q |
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| T |
10367430 |
tctcaagaatgttaggcttgtttgcaagaattggagttccttccttaccactgagagaatccttcaaataa |
10367500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 227 - 484
Target Start/End: Original strand, 10378862 - 10379119
Alignment:
| Q |
227 |
ctacactaaggaatgcgttgaagtagagtctggactctttcttcttcctgatgacattcttgaattgtgtttggatcgtcttccattcgaaggtctcaag |
326 |
Q |
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| T |
10378862 |
ctacactaaggaatgtgttgaagtacagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctcaag |
10378961 |
T |
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| Q |
327 |
aatgttaggcttgtttgcaagaattgaagttccttccttaccactgagagaatccttcaaataaaggatactagatgccaaaatctattgttgtttgtct |
426 |
Q |
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| T |
10378962 |
aatgttaggcttgcttgcaagaattggagttccttccttactaccgagagaatccttcaaataaaggatactagatgccaaaatctatggttgtttgtgt |
10379061 |
T |
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| Q |
427 |
ttggtgctctcatacaacccttttctgatttagattatcatgttaacatgatacatgc |
484 |
Q |
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| T |
10379062 |
ttggtgctctcatacaacccttttctgatttagattatcatgttaacatgatacatgc |
10379119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 361
Target Start/End: Original strand, 43657570 - 43657687
Alignment:
| Q |
244 |
ttgaagtagagtctggactctttcttcttcctgatgacattcttgaattgtgtttggatcgtcttccattcgaaggtctcaagaatgttaggcttgtttg |
343 |
Q |
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| T |
43657570 |
ttgaagtaaagtccgaaatctttcttcttcccgatggtattcttgaaatgtgtttggatcgtgttgcatgcgaaagtctcgataatgctaggcttgtgtg |
43657669 |
T |
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| Q |
344 |
caagaattgaagttcctt |
361 |
Q |
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||| || || |||||||| |
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| T |
43657670 |
caaaaaatggagttcctt |
43657687 |
T |
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