View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4782_low_2 (Length: 502)
Name: NF4782_low_2
Description: NF4782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4782_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 34899760 - 34899335
Alignment:
| Q |
1 |
gatgatatcactgacaatatgataatttggtatctcttgcctatcttattataacatttgcatatgcttgtgtggtacgttacgcataaaaaccaagtgg |
100 |
Q |
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| T |
34899760 |
gatgatatcactgacaatatgataatttggtatctcttgcctatcttattataacatttgcatatgcttgtgtggtac-ttacgcataaaaaccaagtgg |
34899662 |
T |
|
| Q |
101 |
aacatgtcaactgacccactaattgaggttctcctaataactaagaacatttttagagacacattttcgatattcaattttctgcattcagctaccaact |
200 |
Q |
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| T |
34899661 |
aacatgtcaactgacccactagttgaggttctcctaataactaagaacatttttagagacacattttcgatattcaattttctgcattcagctaccaact |
34899562 |
T |
|
| Q |
201 |
aattatttgtaagtcttagcagacacttcttcatagannnnnnnngttgaagaagtcaaaaattatattaaacgaaaaatagatcccaataaatacaggt |
300 |
Q |
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| T |
34899561 |
aattatttgtaagtcttagcagacacttcttcatagattttttttgttgaagaagtcaaaaattatattaaacgaaaaagagatcccaataaatacaagt |
34899462 |
T |
|
| Q |
301 |
tgagtttaagaaggatccaaatagcaccacaagaaacaattagagaagtgtcaaaacaaaaggg-nnnnnnnttcattgatgaattgtatagccctgatt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34899461 |
tgagtttaagaaggatccaaatagcaccacaagaaacaattagagaagtgtcaaaacaaaagggaaaaaaaattcattgatgaattgtatagccctgatt |
34899362 |
T |
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| Q |
400 |
tttaaaattgggcaagactcttctgat |
426 |
Q |
| |
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|||| ||||| |||||||||||||||| |
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| T |
34899361 |
tttagaattgagcaagactcttctgat |
34899335 |
T |
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