View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4782_low_3 (Length: 467)
Name: NF4782_low_3
Description: NF4782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4782_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 12805938 - 12805669
Alignment:
| Q |
1 |
aaaatagtgtaaagagaaagagatatgggtatttgtatgggtggacaagtatgttgagtagtattatttatgtagaaaaaacatcaaatgattgaggaat |
100 |
Q |
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| T |
12805938 |
aaaatagtgtaaagagaaagagatatgggtatttgtatgggtggacaagtatgttgagtagtattatttatgtagaaaaaacatcaaatgattgaggaat |
12805839 |
T |
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| Q |
101 |
aaaaagagaggtgtagcaaattttttactcataagtttattgttttcttctcttttatctaaggattgttgctgtctccttagatacaaattcttcttgg |
200 |
Q |
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| T |
12805838 |
aaaaagagaggtgtagcaaattttttactcataagtttattgttttcttctcttttatctaaggattgttgctgtctccttagatacaaattcttcttgg |
12805739 |
T |
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| Q |
201 |
tgttttctgggtttattctcaaaagcttttttcaaagagacaagaaagcaaggaaaattcaggtcattac |
270 |
Q |
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| T |
12805738 |
tgttttctgggtttattctcaaaagcttttttcaaagagacaagaaagcaaggaaaattcaggtcattac |
12805669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 313 - 452
Target Start/End: Complemental strand, 12805626 - 12805488
Alignment:
| Q |
313 |
ccaagagacaagaaaacatgcaatttaattttagtttgagatgataaatattattagattgtgacaaatttaagaaatttcagatttgcatcaagaaaac |
412 |
Q |
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| T |
12805626 |
ccaagagacaagaaaacatgcaatt-aattttagtttgagatgataaatattattagattgtgacaaatttaagaaatttcagatttgcatcaagaaaac |
12805528 |
T |
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| Q |
413 |
atggctgctgcttcatcatctacacctttcttggaaatca |
452 |
Q |
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| T |
12805527 |
atggctgctgcttcatcatctacacctttcttggaaatca |
12805488 |
T |
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