View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4782_low_6 (Length: 249)
Name: NF4782_low_6
Description: NF4782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4782_low_6 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 94 - 249
Target Start/End: Complemental strand, 10378844 - 10378689
Alignment:
| Q |
94 |
taaataaggttcttaaaacaatttagnnnnnnntagacattaaattttgaattatatatacatatataacaccgttcataatttacaagtattagtgtaa |
193 |
Q |
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| T |
10378844 |
taaataaggttcttaaaacaatttagaaaaaaatagacattaaattttgaattatatatacatatataacaccgttcataatttacaagtattagtgtaa |
10378745 |
T |
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| Q |
194 |
taaaaagagtagaaaaatgatcgtttttctcttgtaatatataattaacatatgta |
249 |
Q |
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| T |
10378744 |
taaaaaaagcagaaaaatgatcgtttttctcctgtaatatataattaagatatgta |
10378689 |
T |
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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 10378934 - 10378872
Alignment:
| Q |
2 |
ggagtagcaaaggcacccaatggagaaaagagggtggtaaaaattgttgcacgtgctatattt |
64 |
Q |
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| T |
10378934 |
ggagtatcaaagacacccgatggagaaaagagggtggtaaaaattgttacacgttctatattt |
10378872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 31383605 - 31383650
Alignment:
| Q |
154 |
catatataacaccgttcataatttacaagtattagtgtaataaaaa |
199 |
Q |
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| T |
31383605 |
catataaaataccgttcataatttacatgtattagtgcaataaaaa |
31383650 |
T |
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