View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4783-Insertion-3 (Length: 883)

Name: NF4783-Insertion-3
Description: NF4783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4783-Insertion-3
NF4783-Insertion-3
[»] chr7 (19 HSPs)
chr7 (8-703)||(23837515-23838210)
chr7 (12-336)||(23848890-23849214)
chr7 (12-336)||(23852761-23853085)
chr7 (12-315)||(23855157-23855460)
chr7 (8-192)||(23842862-23843046)
chr7 (12-257)||(23791695-23791940)
chr7 (12-168)||(23807958-23808114)
chr7 (12-245)||(23802490-23802723)
chr7 (790-883)||(23837350-23837443)
chr7 (263-394)||(23842719-23842857)
chr7 (12-162)||(23857268-23857418)
chr7 (20-213)||(23797918-23798111)
chr7 (12-255)||(23823128-23823371)
chr7 (12-198)||(23840586-23840772)
chr7 (12-198)||(23844034-23844220)
chr7 (12-169)||(23828102-23828259)
chr7 (12-192)||(23817442-23817622)
chr7 (12-195)||(23864831-23865014)
chr7 (10-124)||(23861235-23861349)
[»] chr4 (1 HSPs)
chr4 (9-198)||(6269635-6269824)


Alignment Details
Target: chr7 (Bit Score: 637; Significance: 0; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 8 - 703
Target Start/End: Complemental strand, 23838210 - 23837515
Alignment:
Q  8 ttacttaccttgtcatcaatgaacttagaccagaaacgagccaaagctctttgataaggatcattcggcaagataggattttgtttccaagtctcatcga 107  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  23838210 ttacttaccttgtcatcaatgaacttagaccagaaacgagccaaggctctttgataaggatcagaaggcaagataggattttgtttccaagtctcatcga 23838111  T
Q  108 tgtactcaagaatcacacgagactctgagatgggatttccattatgaacaaaaacaggaaccatcctgtaaactggattgtatttgagaagcgtttcact 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23838110 tgtactcaagaatcacacgagactctgagatgggatttccattatgaacaaaaacaggaaccatcctgtaaactggattgtatttgagaagcgtttcact 23838011  T
Q  208 caagttacccaatttttcttccgaatatttgtattcaatacccttcaattccaaggcaatttgaactcgaataacaaatgggcttcccacagaacctaaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23838010 caagttacccaatttttcttccgaatatttgtattcaatacccttcaattccaaggcaatttgaactcgaataacaaatgggcttcccacagaacctaaa 23837911  T
Q  308 agcttcacttcttcctcagatgcagccatcacaccatagccttgcaacactctcttgactttcccaactaatgtatgaatcatagttnnnnnnnnntcag 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||         ||||    
T  23837910 agcttcacttcttcctcagatgcagccatcacaccatagccttgcaacactctcttgactttcgcaactaatgtatgaatcatagttaaaaaaaaatcag 23837811  T
Q  408 cccgaaatataaaagttttagaggtctccgcgacttttattttaattacgattgagaccgcgtcagtcttgtttatctgtatattttaacatcataatag 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23837810 cccgaaatataaaagttttagaggtctccgcgacttttattttaattacgattgagaccgcgtcagtctcgtttatctgtatattttaacatcataatag 23837711  T
Q  508 aatgtgtgtcttatagatacaagaagagtaatttaactgacaaatattctaatctttccaaaagaacaaaaacaaagtataacgtgagatgtgagagtct 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23837710 aatgtgtgtcttatagatacaagaagagtaatttaactgacaaatattctaatctttccaaaagaacaaaaacaaagtataacgtgagatgtgagagtct 23837611  T
Q  608 gaataagagtccaaggataaactaacaataaaggaaaattaataaaacaatgattctcttcacagtaacgagatatgagtcgtaatttggtgcaag 703  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23837610 gaatatgagtccaaggataaagtaacaataaaggaaaattaataaaacaatgattctcttcacagtaacgagatatgagtcgtaatttggtgcaag 23837515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 12 - 336
Target Start/End: Complemental strand, 23849214 - 23848890
Alignment:
Q  12 ttaccttgtcatcaatgaacttagaccagaaacgagccaaagctctttgataaggatcattcggcaagataggattttgtttccaagtctcatcgatgta 111  Q
    ||||||| |||||||||||||| ||||| || ||| ||||||||||||  |||||||||   ||||||||||| || |||||||||| ||| || || ||    
T  23849214 ttaccttttcatcaatgaactttgaccaaaaccgatccaaagctcttttgtaaggatcagaaggcaagatagggttctgtttccaagcctcgtcaatata 23849115  T
Q  112 ctcaagaatcacacgagactctgagatgggatttccattatgaacaaaaacaggaaccatcctgtaaactggattgtatttgagaagcgtttcactcaag 211  Q
    ||||| |||||||||||| ||||| |||||||| ||||||||||||| ||||||||||||||| ||||||||||| ||||||||||| |||||||||||     
T  23849114 ctcaataatcacacgagattctgatatgggattcccattatgaacaagaacaggaaccatcctataaactggattatatttgagaagtgtttcactcaaa 23849015  T
Q  212 ttacccaatttttcttccgaatatttgtattcaatacccttcaattccaaggcaatttgaactcgaataacaaatgggcttcccacagaacctaaaagct 311  Q
    |||||||||||||||||   |||||||| |||||| ||||||||||  |  |||||||||||||  || |||||||| |||||||||||||| | |||||    
T  23849014 ttacccaatttttcttcaacatatttgtgttcaattcccttcaattttagagcaatttgaactcttatcacaaatggacttcccacagaacccagaagct 23848915  T
Q  312 tcacttcttcctcagatgcagccat 336  Q
      |||||||| |||  |||||||||    
T  23848914 gaacttcttcatcaattgcagccat 23848890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 12 - 336
Target Start/End: Complemental strand, 23853085 - 23852761
Alignment:
Q  12 ttaccttgtcatcaatgaacttagaccagaaacgagccaaagctctttgataaggatcattcggcaagataggattttgtttccaagtctcatcgatgta 111  Q
    |||||||||||||||||||||||||||| |||||  |||| |||||||||||||||||||| ||||||||||| ||||||||||||| |||||| || ||    
T  23853085 ttaccttgtcatcaatgaacttagaccaaaaacggtccaaggctctttgataaggatcattgggcaagatagggttttgtttccaagcctcatcaatata 23852986  T
Q  112 ctcaagaatcacacgagactctgagatgggatttccattatgaacaaaaacaggaaccatcctgtaaactggattgtatttgagaagcgtttcactcaag 211  Q
    ||||||||||||||| || ||||| || || || ||||||||||||| ||| ||||||||| |||||||||||||||| |||||||| |||||||||||     
T  23852985 ctcaagaatcacacgtgattctgaaataggcttcccattatgaacaagaactggaaccatcttgtaaactggattgtaattgagaagtgtttcactcaaa 23852886  T
Q  212 ttacccaatttttcttccgaatatttgtattcaatacccttcaattccaaggcaatttgaactcgaataacaaatgggcttcccacagaacctaaaagct 311  Q
    |  |||| |||||||||   |||||||| |||||| ||||||||||  |  ||||||||||| |  || |||||||| |||||||| | ||| |||||||    
T  23852885 tagcccagtttttcttcaacatatttgtgttcaattcccttcaattttagagcaatttgaacccttatcacaaatggacttcccactgcacccaaaagct 23852786  T
Q  312 tcacttcttcctcagatgcagccat 336  Q
      || ||||| |||  |||||||||    
T  23852785 gaacctcttcttcaattgcagccat 23852761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 12 - 315
Target Start/End: Complemental strand, 23855460 - 23855157
Alignment:
Q  12 ttaccttgtcatcaatgaacttagaccagaaacgagccaaagctctttgataaggatcattcggcaagataggattttgtttccaagtctcatcgatgta 111  Q
    ||||||| ||||| | |||||| | ||| || ||| |||| |||||||  |||||||||   ||||||||||| |||||||||||||||||||| || ||    
T  23855460 ttaccttctcatctaggaacttggcccaaaagcgatccaaggctcttttgtaaggatcagaaggcaagatagggttttgtttccaagtctcatcaatata 23855361  T
Q  112 ctcaagaatcacacgagactctgagatgggatttccattatgaacaaaaacaggaaccatcctgtaaactggattgtatttgagaagcgtttcactcaag 211  Q
    |||||||||||||||||||||||| | ||| ||  |||| ||||||| ||||||||||||| ||||||  || |||||| ||||||| |||||||||||     
T  23855360 ctcaagaatcacacgagactctgaaacgggcttctcattgtgaacaagaacaggaaccatcttgtaaatagggttgtatctgagaagtgtttcactcaaa 23855261  T
Q  212 ttacccaatttttcttccgaatatttgtattcaatacccttcaattccaaggcaatttgaactcgaataacaaatgggcttcccacagaacctaaaagct 311  Q
    |  || ||||||||||||  |||||||||||||||||||||||||| ||  |||||||||||||  || |||||||| |||||||||||||| |||||||    
T  23855260 tggcctaatttttcttccacatatttgtattcaatacccttcaatttcagagcaatttgaactcttatcacaaatggacttcccacagaacccaaaagct 23855161  T
Q  312 tcac 315  Q
    ||||    
T  23855160 tcac 23855157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 8 - 192
Target Start/End: Complemental strand, 23843046 - 23842862
Alignment:
Q  8 ttacttaccttgtcatcaatgaacttagaccagaaacgagccaaagctctttgataaggatcattcggcaagataggattttgtttccaagtctcatcga 107  Q
    |||||||| ||||||||||||||||| | ||||||||||||||  ||||||||||||| |||||||||||||||||| ||| |||||||||||||||| |    
T  23843046 ttacttacattgtcatcaatgaacttggtccagaaacgagccagggctctttgataagaatcattcggcaagataggttttcgtttccaagtctcatcaa 23842947  T
Q  108 tgtactcaagaatcacacgagactctgagatgggatttccattatgaacaaaaacaggaaccatcctgtaaactggattgtattt 192  Q
    ||||||||||||||||||||||||  || | ||| ||||  || |||||||||||||||||||||||||||||||||||||||||    
T  23842946 tgtactcaagaatcacacgagacttcgatacgggctttcacttgtgaacaaaaacaggaaccatcctgtaaactggattgtattt 23842862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 12 - 257
Target Start/End: Original strand, 23791695 - 23791940
Alignment:
Q  12 ttaccttgtcatcaatgaacttagaccagaaacgagccaaagctctttgataaggatcattcggcaagataggattttgtttccaagtctcatcgatgta 111  Q
    ||||||| ||||| |||||||| | ||||||||||||||| |||||||  |||||||||   |||||||||||||||||||||||||||||||| || ||    
T  23791695 ttaccttatcatctatgaacttggtccagaaacgagccaaggctctttcgtaaggatcagaaggcaagataggattttgtttccaagtctcatcaatata 23791794  T
Q  112 ctcaagaatcacacgagactctgagatgggatttccattatgaacaaaaacaggaaccatcctgtaaactggattgtatttgagaagcgtttcactcaag 211  Q
    ||||||||||||| | || ||||| ||||| ||  |||||||||| || ||||||||| || | ||||| || ||||||||    || || |||||||||    
T  23791795 ctcaagaatcacaagggattctgatatgggcttatcattatgaactaacacaggaaccttcttataaacagggttgtattttttgagtgtctcactcaag 23791894  T
Q  212 ttacccaatttttcttccgaatatttgtattcaatacccttcaatt 257  Q
    || ||| | |||||||||  ||| |||||||| |  ||||||||||    
T  23791895 ttcccccacttttcttcctcatacttgtattcgactcccttcaatt 23791940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 12 - 168
Target Start/End: Original strand, 23807958 - 23808114
Alignment:
Q  12 ttaccttgtcatcaatgaacttagaccagaaacgagccaaagctctttgataaggatcattcggcaagataggattttgtttccaagtctcatcgatgta 111  Q
    ||||||||||||||||||| || ||||||||||||||||  ||||||||||||||||||   ||||||||||| |||||||||||||||||||| || ||    
T  23807958 ttaccttgtcatcaatgaaattggaccagaaacgagccatggctctttgataaggatcagaaggcaagatagggttttgtttccaagtctcatcaatata 23808057  T
Q  112 ctcaagaatcacacgagactctgagatgggatttccattatgaacaaaaacaggaac 168  Q
    ||||||||||||| | || || |||||||| ||  |||||| ||| |||||||||||    
T  23808058 ctcaagaatcacaagtgattcagagatgggcttgtcattataaactaaaacaggaac 23808114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 12 - 245
Target Start/End: Original strand, 23802490 - 23802723
Alignment:
Q  12 ttaccttgtcatcaatgaacttagaccagaaacgagccaaagctctttgataaggatcattcggcaagataggattttgtttccaagtctcatcgatgta 111  Q
    ||||||| ||||||||||| || ||||||||||||||||| |||||||   ||||||||   ||||| || ||||||||||||||||||||||| || ||    
T  23802490 ttaccttatcatcaatgaaattggaccagaaacgagccaaggctcttttggaaggatcagaaggcaatatgggattttgtttccaagtctcatcaatata 23802589  T
Q  112 ctcaagaatcacacgagactctgagatgggatttccattatgaacaaaaacaggaaccatcctgtaaactggattgtatttgagaagcgtttcactcaag 211  Q
     |||||||||||| | |||||||| ||||| ||  ||||||||| ||||||||||||  || | ||||| || ||||||||    || || |||||||||    
T  23802590 ttcaagaatcacaagggactctgatatgggcttatcattatgaataaaaacaggaactttcttataaacagggttgtattttttgagtgtctcactcaag 23802689  T
Q  212 ttacccaatttttcttccgaatatttgtattcaa 245  Q
    || || |  ||||||| |  ||||||||||||||    
T  23802690 ttcccaaccttttcttgctcatatttgtattcaa 23802723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 790 - 883
Target Start/End: Complemental strand, 23837443 - 23837350
Alignment:
Q  790 aattacttgaagtgcacgtataatgtctaagtgcaccttgtaagagtataaacatgcaaaagagagtnnnnnnnngccaaaaactcaacataat 883  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||    
T  23837443 aattacttgaagtgcacgtataatgtctaagtgcaccttgtaagagtataaacatgcaaaagagagtaaaaaaaagccaaaaactcaacataat 23837350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 263 - 394
Target Start/End: Complemental strand, 23842857 - 23842719
Alignment:
Q  263 gcaatttgaactcgaataacaaatgggcttcccacaga----acctaaaagcttcacttcttcctcagatgcagccatcacaccatagccttgcaacact 358  Q
    ||||||||||||| ||| ||||||||||||||||||||    || ||||||||||||| |||||||||||||||||||||| ||| |||||||||| |||    
T  23842857 gcaatttgaactctaatgacaaatgggcttcccacagacagaacgtaaaagcttcactacttcctcagatgcagccatcactccacagccttgcaatact 23842758  T
Q  359 c---tcttgactttcccaactaatgtatgaatcatagtt 394  Q
    |   |||| |||||  |||||||| ||||||||||||||    
T  23842757 ctcttcttaactttaacaactaatatatgaatcatagtt 23842719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 23857268 - 23857418
Alignment:
Q  12 ttaccttgtcatcaatgaacttagaccagaaacgagccaaagctctttgataaggatcattcggcaagataggattttgtttccaagtctcatcgatgta 111  Q
    |||||||||| || ||||| |||||||| || |||||||| |||||||| || ||||||   |||||||||||||||||||||||||||||||| || ||    
T  23857268 ttaccttgtcgtcgatgaagttagaccaaaatcgagccaaggctctttggtatggatcagaaggcaagataggattttgtttccaagtctcatcaatata 23857367  T
Q  112 ctcaagaatcacacgagactctgagatgggatttccattatgaacaaaaac 162  Q
    ||||| ||||| | | |||||||| || || ||| |||| |||||||||||    
T  23857368 ctcaataatcaaaagggactctgatataggcttttcattgtgaacaaaaac 23857418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 23797918 - 23798111
Alignment:
Q  20 tcatcaatgaacttagaccagaaacgagccaaagctctttgataaggatcattcggcaagataggattttgtttccaagtctcatcgatgtactcaagaa 119  Q
    ||||| |||||||| ||||||||||| ||||| ||||||| | ||||||||   |||||||||||||||||||||||||||||||| || || |||| ||    
T  23797918 tcatctatgaacttggaccagaaacgtgccaaggctcttttagaaggatcagaaggcaagataggattttgtttccaagtctcatcaatatattcaataa 23798017  T
Q  120 tcacacgagactctgagatgggatttccattatgaacaaaaacaggaaccatcctgtaaactggattgtatttgagaagcgtttcactcaagtt 213  Q
    ||||| |||| ||||  || || ||  |||||||||| || ||||||||| || | ||||| || ||||| ||||  || || |||||||||||    
T  23798018 tcacaagagattctgctataggcttatcattatgaactaatacaggaaccttcttataaacagggttgtaattgatgagtgtatcactcaagtt 23798111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 12 - 255
Target Start/End: Original strand, 23823128 - 23823371
Alignment:
Q  12 ttaccttgtcatcaatgaacttagaccagaaacgagccaaagctctttgataaggatcattcggcaagataggattttgtttccaagtctcatcgatgta 111  Q
    ||||||| ||||| || ||||| ||||||||||| ||||| ||||||| ||||||||||   |||||||| ||||||||||||||||||||||| || ||    
T  23823128 ttaccttatcatctataaacttggaccagaaacgtgccaaggctcttttataaggatcagaaggcaagattggattttgtttccaagtctcatcaatata 23823227  T
Q  112 ctcaagaatcacacgagactctgagatgggatttccattatgaacaaaaacaggaaccatcctgtaaactggattgtatttgagaagcgtttcactcaag 211  Q
     |||| ||||||| |||| ||||  || || ||  |||||||||| || ||||||||  || | ||||| || |||||||| |  |  || ||||||||     
T  23823228 ttcaataatcacaagagattctgctataggtttatcattatgaactaatacaggaactttcttataaacagggttgtatttaatgactgtatcactcaaa 23823327  T
Q  212 ttacccaatttttcttccgaatatttgtattcaatacccttcaa 255  Q
    || || |  |||||||||  |||| ||||||||| |||||||||    
T  23823328 ttcccaaccttttcttcctcatatctgtattcaacacccttcaa 23823371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 23840586 - 23840772
Alignment:
Q  12 ttaccttgtcatcaatgaacttagaccagaaacgagccaaagctctttgataaggatcattcggcaagataggattttgtttccaagtctcatcgatgta 111  Q
    ||||||||||||| ||||| || ||||| || |||||||| |||||||| |  |||||| | ||||| || || ||||| ||||||  |||||| |||||    
T  23840586 ttaccttgtcatcgatgaatttcgaccaaaatcgagccaaggctctttggtgtggatcagttggcaaaatggggttttgcttccaaacctcatcaatgta 23840685  T
Q  112 ctcaagaatcacacgagactctgagatgggatttccattatgaacaaaaacaggaaccatcctgtaaactggattgtatttgagaag 198  Q
    ||||||||||||| |||| ||||| ||||| ||  |||| ||||||||||| |||||| || | | ||||||||| ||||| |||||    
T  23840686 ctcaagaatcacaagagattctgaaatgggcttatcattgtgaacaaaaactggaaccttcttatgaactggattatatttaagaag 23840772  T

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Target: chr7; HSP #15
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 23844034 - 23844220
Alignment:
Q  12 ttaccttgtcatcaatgaacttagaccagaaacgagccaaagctctttgataaggatcattcggcaagataggattttgtttccaagtctcatcgatgta 111  Q
    ||||||||||||| ||||| || ||||| || |||||||| |||||||| |  ||||||   ||||| ||||| ||||| ||||||  |||||| |||||    
T  23844034 ttaccttgtcatcgatgaattttgaccaaaatcgagccaaggctctttggtgtggatcagaaggcaaaatagggttttgcttccaaacctcatcaatgta 23844133  T
Q  112 ctcaagaatcacacgagactctgagatgggatttccattatgaacaaaaacaggaaccatcctgtaaactggattgtatttgagaag 198  Q
    ||||||||||||| | || ||||| || || ||  |||| ||||||||||| |||||| || | | |||||||||||||||||||||    
T  23844134 ctcaagaatcacaagggattctgatataggtttctcattgtgaacaaaaactggaaccttcttatgaactggattgtatttgagaag 23844220  T

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Target: chr7; HSP #16
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 12 - 169
Target Start/End: Original strand, 23828102 - 23828259
Alignment:
Q  12 ttaccttgtcatcaatgaacttagaccagaaacgagccaaagctctttgataaggatcattcggcaagataggattttgtttccaagtctcatcgatgta 111  Q
    ||||||| ||||| |||||||| | ||||||||||||||| |||||||  |||||||||   || |||||||||||||| |||||||| ||||| |  ||    
T  23828102 ttaccttatcatctatgaactttgtccagaaacgagccaaggctcttttgtaaggatcagaaggtaagataggattttgcttccaagtttcatcaacata 23828201  T
Q  112 ctcaagaatcacacgagactctgagatgggatttccattatgaacaaaaacaggaacc 169  Q
    ||||||||||||| | || ||||| ||||| ||  |||||||||| || |||||||||    
T  23828202 ctcaagaatcacaagggattctgatatgggcttatcattatgaactaatacaggaacc 23828259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 23817442 - 23817622
Alignment:
Q  12 ttaccttgtcatcaatgaacttagaccagaaacgagccaaagctctttgataaggatcattcggcaagataggattttgtttccaagtctcatcgatgta 111  Q
    ||||||||||||| ||||  || ||||| || ||| |||| |||||||| || ||||||   ||||| || ||||||||||||||||||||||| || ||    
T  23817442 ttaccttgtcatctatgaggttggaccaaaatcgaaccaaggctctttggtatggatcagaaggcaatattggattttgtttccaagtctcatcaatata 23817541  T
Q  112 ctcaagaatcacacgagactctgagatgggatttccattatgaacaaaaacaggaaccatcctgtaaactggattgtattt 192  Q
     |||||||||||| | |||||||  || || ||  ||||||||| ||||||||||||| || | ||||| || ||||||||    
T  23817542 ttcaagaatcacaagtgactctgctataggcttatcattatgaataaaaacaggaaccttcttataaacagggttgtattt 23817622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 12 - 195
Target Start/End: Original strand, 23864831 - 23865014
Alignment:
Q  12 ttaccttgtcatcaatgaacttagaccagaaacgagccaaagctctttgataaggatcattcggcaagataggattttgtttccaagtctcatcgatgta 111  Q
    ||||||||||||| |||||||| ||||| || |||||||| | | |||| || |||||   ||| || || |||||||||||||||  |||||| || ||    
T  23864831 ttaccttgtcatcgatgaacttggaccaaaatcgagccaatgatttttggtatggatcggacggtaaaatgggattttgtttccaaacctcatcaatata 23864930  T
Q  112 ctcaagaatcacacgagactctgagatgggatttccattatgaacaaaaacaggaaccatcctgtaaactggattgtatttgag 195  Q
    || |||||||||| |||| ||||| || || ||  |||| ||||||||||| |||||| || | | ||||||||||||| ||||    
T  23864931 ctgaagaatcacaagagattctgatataggcttctcattgtgaacaaaaactggaaccttcttatgaactggattgtatatgag 23865014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 23861235 - 23861349
Alignment:
Q  10 acttaccttgtcatcaatgaacttagaccagaaacgagccaaagctctttgataaggatcattcggcaagataggattttgtttccaagtctcatcgatg 109  Q
    ||||||||||||||| ||||| || ||||| || |||||||| | | |||| || ||||||  || ||| || |||||||||||||||  |||||| |||    
T  23861235 acttaccttgtcatcgatgaatttcgaccaaaatcgagccaatgatttttggtatggatcagacgacaaaatgggattttgtttccaaacctcatcaatg 23861334  T
Q  110 tactcaagaatcaca 124  Q
    |||||||||||||||    
T  23861335 tactcaagaatcaca 23861349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 198
Target Start/End: Complemental strand, 6269824 - 6269635
Alignment:
Q  9 tacttaccttgtcatcaatgaacttagaccagaaacgagccaaagctctttgataaggatcattcggcaagataggattttgtttccaagtctcatcgat 108  Q
    |||| |||||||||||||    ||||||||| ||||||||||| ||||| | ||||||||| |  | ||| |  ||||| |  ||||| |||||||| ||    
T  6269824 tactaaccttgtcatcaagagtcttagaccaaaaacgagccaaggctctctcataaggatcctcagacaaaagtggattattcttccatgtctcatctat 6269725  T
Q  109 gtactcaagaatcacacgagactctgagatgggatttccattatgaacaaaaacaggaaccatcctgtaaactggattgtatttgagaag 198  Q
    ||| |||||||| | | ||||||| |  || ||||||||||| ||||||| || ||| ||| || ||||||| ||||||||||| |||||    
T  6269724 gtattcaagaatgataagagactcagcaattggatttccattgtgaacaagaataggcaccttcttgtaaacaggattgtatttaagaag 6269635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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