View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4783-Insertion-4 (Length: 811)

Name: NF4783-Insertion-4
Description: NF4783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4783-Insertion-4
NF4783-Insertion-4
[»] chr2 (2 HSPs)
chr2 (7-669)||(8797400-8798066)
chr2 (700-811)||(8798096-8798205)


Alignment Details
Target: chr2 (Bit Score: 592; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 7 - 669
Target Start/End: Original strand, 8797400 - 8798066
Alignment:
Q  7 aaagcacccatcacataagaacaacttccattagaactaccctccattgaattaatactcactcact--------tagccacaataacacttccttttta 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||    
T  8797400 aaagcacccatcacataagaacaacttccattagaactaccctccattgaattaatactcactcactcactcacttagccacaataacacttccttttta 8797499  T
Q  99 ttaccctttttgccttctaggtcagatttttctttctctcacttgaatgaatgatattaatattgaagatgtttttgtttcacacaagggtcacccgccc 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8797500 ttaccctttttgccttctaggtcagatttttctttctctcacttgaa----tgatattaatattgaagatgtttttgtttcacacaagggtcacccgccc 8797595  T
Q  199 gggttttatggtaaaaaagtaacaggcttttttacagaaaaacataaatagtgatagtgttttgtggtggctatgttgtatagttacagtcagttacatg 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8797596 gggttttatggtaaaaaagtaacaggcttttttacagaaaaacataaatagtgatagtgttttgtggtggctatgttgtatagttacagtcagttacatg 8797695  T
Q  299 aagaagtagtgaagaggttttttggattctactactggcaaaagcctgcacagatttcctttggaaaatgagtgttaatctctctttccacacattttca 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8797696 aagaagtagtgaagaggttttttggattctactactggcaaaagcctgcacagatttcctttggaaaatgagtgttaatctctctttccacacattttca 8797795  T
Q  399 gcatttaatgaagaaatgaatctctctttgtctctctagctagtggataatacaaggttttttatgaaggagcgagaaagcagtagagtgcacgcggggt 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  8797796 gcatttaatgaagaaatgaatctctctttgtctctctagctagtggataatacaaggttttttatgaaggagtgagaaagcagtagagtgcacgcgggat 8797895  T
Q  499 atgtagagagagagatgaaggttgagttacagaagaagggttagtgtgaggcattggtgccnnnnnnnggttttaccttcccaatgaaaactctaccttc 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||    
T  8797896 atgtagagagagagatgaaggttgagttacagaagaagggttagtgtgaagcattggtgccaaaaaaaggttttaccttcccaatgaaaactctaccttc 8797995  T
Q  599 ctttttctgcactgccactgatacccctgccatacaaaagcagtggagtgagagacaagagaacaagcaag 669  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8797996 ctttttctgcactgccactgatacccctgccatacaaaagcagtggagtgagagacaagagaacaagcaag 8798066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 700 - 811
Target Start/End: Original strand, 8798096 - 8798205
Alignment:
Q  700 ggagagagcgtagtaataaatagtgagctagggaacgatcaaatcgaggaggagaaaacaagttacctactactactatgctgatgatgatgaatatatt 799  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8798096 ggagagag-gtagtaataaatagtgagctagg-aacgatcaaatcgaggaggagaaaacaagttacctactactactatgctgatgatgatgaatatatt 8798193  T
Q  800 gggggagatagg 811  Q
    |||| |||||||    
T  8798194 ggggaagatagg 8798205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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