View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4783-Insertion-5 (Length: 733)
Name: NF4783-Insertion-5
Description: NF4783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4783-Insertion-5 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 708; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 708; E-Value: 0
Query Start/End: Original strand, 6 - 733
Target Start/End: Complemental strand, 3202836 - 3202109
Alignment:
| Q |
6 |
caatttacaaagtatgcggcgtctttggttgtgctgaaagtgtcatattagctggaatgaatgttgctgttgatgatggtgttgatgttctttctctctc |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3202836 |
caatttacaaagtatgcggcgtctttggttgtgctgaaagtgtcatattagctggaatggatgttgctgttgatgatggtgttgatgttctttctctctc |
3202737 |
T |
|
| Q |
106 |
ccttggacaaccctctacttctttctttgaaagtggaattgcacttggtgcatttagcgcaattcaaaagggaatttttgttagttgttctgctggaaat |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3202736 |
ccttggacaaccctctacttctttctttgaaagtggaattgcacttggtgcatttagtgcaattcaaaagggaatttttgttagttgttctgctggaaat |
3202637 |
T |
|
| Q |
206 |
tcaggttcttttcatggtacattggctaatgaagcaccatggattttaactgttggtgccagcacaattgacagaaaaatagaggcagtagctaagcctg |
305 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3202636 |
tcaggtccttttcatggtacattggctaatgaagcaccatggattttaactgttggtgccagcacaattgacagaaaaatagaggcagtagctaagcttg |
3202537 |
T |
|
| Q |
306 |
gggatgggacggaatatctcggagaatcagttttccaaccaaaagactttgcatcagcattattgccacttgtgtatgcaggtgcaattaacacaagtga |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3202536 |
gggatgggacggaatatctcggagaatcagttttccaaccaaaagactttgcatcaacattattgccacttgtgtatgcaggtgcaattaacacaagtga |
3202437 |
T |
|
| Q |
406 |
tgatttcattgccttttgtaatcctttttccatggagaatgttgatgttaagggaaaggtagtagtgtgtgagcaagatggatcggttgaaagagtagcc |
505 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3202436 |
tgatttcattgccttttgtaatcctttttccatggagaatgttgatgttaagggaaaggtagtagtgtgtgagcaagatggatcggttgaaagagtagcc |
3202337 |
T |
|
| Q |
506 |
aaaggtcaagcagttaaagatgctggtggtgctgctatgatacttttgaatggtgaagatgaagctttcaatccaattgctgatgttcatgttctacctg |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3202336 |
aaaggtcaagcagttaaagatgctggtggtgctgctatgatacttttgaatggtgaagatgaagctttcaatccaattgctgatgttcatgttctacctg |
3202237 |
T |
|
| Q |
606 |
ctgtgcatgtaagttactctgctggtttatccatcaaagattatataaactcaacttcaacaccaatggccacaattttattcaaaggaactgttattgg |
705 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3202236 |
ctgtgcatgtaagttactctgctggtttatccatcaaagattatataaactcaacttcaacaccaatggccacaattttattcaaaggaactgttattgg |
3202137 |
T |
|
| Q |
706 |
aaatccactttcccctcaagttgcttca |
733 |
Q |
| |
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|||||||||||||||||||||||||||| |
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|
| T |
3202136 |
aaatccactttcccctcaagttgcttca |
3202109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 6 - 733
Target Start/End: Complemental strand, 3208810 - 3208083
Alignment:
| Q |
6 |
caatttacaaagtatgcggcgtctttggttgtgctgaaagtgtcatattagctggaatgaatgttgctgttgatgatggtgttgatgttctttctctctc |
105 |
Q |
| |
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||||||||||||||||| | ||| |||||| |||||||| ||||||||||||||| ||| ||| |||||||||| ||||||||| ||||||||||| |
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| T |
3208810 |
caatttacaaagtatgcaacatctacggttgtactgaaagttcaatattagctggaatggatgctgcagttgatgatgatgttgatgtactttctctctc |
3208711 |
T |
|
| Q |
106 |
ccttggacaaccctctacttctttctttgaaagtggaattgcacttggtgcatttagcgcaattcaaaagggaatttttgttagttgttctgctggaaat |
205 |
Q |
| |
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||| ||| |||||| || ||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| |||| |
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| T |
3208710 |
cctcggaggaccctcctctcctttctttgaagatggaattgcacttggtgcatttagtgcaattcaaaaggggatttttgttagttgttcagctgcaaat |
3208611 |
T |
|
| Q |
206 |
tcaggttcttttcatggtacattggctaatgaagcaccatggattttaactgttggtgccagcacaattgacagaaaaatagaggcagtagctaagcctg |
305 |
Q |
| |
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|||||| ||||| ||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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|
| T |
3208610 |
tcaggtcctttttatggtactttgtctaatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaaattgaggcagtagctaagcttg |
3208511 |
T |
|
| Q |
306 |
gggatgggacggaatatctcggagaatcagttttccaaccaaaagactttgcatcagcattattgccacttgtgtatgcaggtgcaattaacacaagtga |
405 |
Q |
| |
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| || ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
3208510 |
gcgacgggacagaatatcttggagaatcagttttccaaccaaaagactttgcatcgacattattgccacttgtgtatgcaggttcaattaatacaagtga |
3208411 |
T |
|
| Q |
406 |
tgatttcattgccttttgtaatcctttttccatggagaatgttgatgttaagggaaaggtagtagtgtgtgagcaagatggatcggttgaaagagtagcc |
505 |
Q |
| |
|
||||| ||||||||||||| |||| || ||||| |||| ||||||||||||||||| |||| ||||||||||||| ||| | |||| |||||||||| |
|
|
| T |
3208410 |
tgattccattgccttttgtggtcctattgccatgaagaaggttgatgttaagggaaaaatagttgtgtgtgagcaaggtgggtttgttggaagagtagcc |
3208311 |
T |
|
| Q |
506 |
aaaggtcaagcagttaaagatgctggtggtgctgctatgatacttttgaatggtgaagatgaagctttcaatccaattgctgatgttcatgttctacctg |
605 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3208310 |
aaaggtcaagcagttaaagatgccggtggtgctgctatgatacttttgaacagtgaaggtgaagatttcaatccaattgctgatgttcatgttctacctg |
3208211 |
T |
|
| Q |
606 |
ctgtgcatgtaagttactctgctggtttatccatcaaagattatataaactcaacttcaacaccaatggccacaattttattcaaaggaactgttattgg |
705 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
3208210 |
ctgtgcatgtaagttactctgctggtttaaacatccaagattatataaattcaacttccacaccaatggccacaattttattcaaaggaactgtcattgg |
3208111 |
T |
|
| Q |
706 |
aaatccactttcccctcaagttgcttca |
733 |
Q |
| |
|
|||||| | ||||||||||||||||| |
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|
| T |
3208110 |
aaatcccaatgcccctcaagttgcttca |
3208083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 126 - 711
Target Start/End: Complemental strand, 3216629 - 3216041
Alignment:
| Q |
126 |
ctttctttgaaagtggaattgcacttggtgcatttagcgcaattcaaaagggaatttttgttagttgttctgctggaaattcaggttcttttcatggtac |
225 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||| |||| ||||||||||||||| |||||||| || |||||||||| ||| || | ||||||| |
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|
| T |
3216629 |
ctttctttgaagatgtaattgcacttggtgcatttagtgcaaatcaaaagggaattttcgttagttgctcagctggaaattttggtcctgattatggtac |
3216530 |
T |
|
| Q |
226 |
attggctaatgaagcaccatggattttaactgttggtgccagcacaattgacagaaaaatagaggcagtagctaagcctggggatgggacggaatatctc |
325 |
Q |
| |
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| | |||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||||||| ||| ||||||| | ||| | ||| ||||| | |
|
|
| T |
3216529 |
aacgtctaatgaagcaccatggattctaactgttggtgctagcacaactgatagaaaaatagaagcaatagctaaacttggcaacggggaaaaatatatt |
3216430 |
T |
|
| Q |
326 |
ggagaatcagttttccaaccaaaagactttgcatcagcattattgccacttgtgtatgcaggtgcaattaacacaagtgatgatttcattgccttttgta |
425 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||||| || | ||||||||||||||||||||| | |||| | ||||||| ||| ||||||||||||| |
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|
| T |
3216429 |
ggagaatcagtgtttcaaccaaaagagtttgcatcaacactgttgccacttgtgtatgcaggttctgttaatataagtgataattccattgccttttgtg |
3216330 |
T |
|
| Q |
426 |
atcctttttccatggagaatgttgatgttaagggaaaggtagtagtgtgtgagcaagatggatcggttgaaagagtagccaaaggtcaagcagttaaaga |
525 |
Q |
| |
|
|||| |||||||| |||| |||||||||||||||||||||| |||||||| ||| |||| ||| | || ||| |||| ||||||||||||||| |
|
|
| T |
3216329 |
gtcctatttccatgaagaacattgatgttaagggaaaggtagttttgtgtgaggaaggtggacttgtttcacaagcagcgaaagctcaagcagttaaaga |
3216230 |
T |
|
| Q |
526 |
tgctggtggtgctgctatgatacttttgaatggtgaagatgaagctttcaatccaattgctgatgttcatgt---tctacctgctgtgcatgtaagttac |
622 |
Q |
| |
|
|||||||| |||| ||||| || ||||| || || | ||| ||| |||||| | |||||||| | ||||||||||| | |||||||||| |
|
|
| T |
3216229 |
cgctggtggatctgccatgatcctcatgaatagtaaacttcaaggttttgatccaaaatccgatgttcaagacaatctacctgctgcacttgtaagttac |
3216130 |
T |
|
| Q |
623 |
tctgctggtttatccatcaaagattatataaactcaacttcaacaccaatggccacaattttattcaaaggaactgttattggaaatcc |
711 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
3216129 |
tctgctggtttatccatcaaagattatataaactcaacttcaacaccaatggccacgattttattcaatggaactgttattggaaatcc |
3216041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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