View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4783-Insertion-6 (Length: 601)
Name: NF4783-Insertion-6
Description: NF4783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4783-Insertion-6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 8 - 601
Target Start/End: Complemental strand, 38643791 - 38643189
Alignment:
| Q |
8 |
gattataattgattgaagattaaacacacaactgagtgtaaattata----------------tgaaactagagtatgcatgtcataagaagtaattcaa |
91 |
Q |
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| T |
38643791 |
gattataattgattgaagattaaacacacaactgagtgtaaattggagatcagatcaatggattgaaactagagtatgcatgtcataagaagtaattcaa |
38643692 |
T |
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| Q |
92 |
tgcaaaaatatgtactataggttatgattatatcatgatatatgttccaaaaaaggtctaaacatnnnnnnnnnnnnnnntcaaagacattgaaaataaa |
191 |
Q |
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| T |
38643691 |
tgcaaaaatatgtactataggttatgaatatatcatgatatatgttccaaaaaaggtctaaacataaaaaaaa-------tcaaagacattgaaaataaa |
38643599 |
T |
|
| Q |
192 |
atcacttactgaggaaatctcccaagctgaattgtttcttggcaacccacttctgataattaacagttggcttttcaagattgtcaaaccagcctaaaga |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38643598 |
atcacttactgaggaaatctcccaagctgaattgtttcttggcaacccacttctgataattaacagttggcttttcaagattgtcaaaccagcctaaaga |
38643499 |
T |
|
| Q |
292 |
atctcccactgtgtaatttttgtaagctccaacagaacctaagaaacatgagagaaaaagacaagaaagagttgagaatagaagaaaccatgatgagttt |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38643498 |
atctcccactgtgtaatttttgtaagctccaacagaacctaagaaacatgggagaaaaagacaagaaagagttgagaatagaagaaaccatgatgagttt |
38643399 |
T |
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| Q |
392 |
cttctatgttccattattcttggggtgagttgagtgaaatgtgaataatggcaactagcagaggcaaactaacaactaagtactagcttttatgacaggc |
491 |
Q |
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| T |
38643398 |
cttctatgttccattattcttggggtgagttgagtgaaatgtgaataatggcaactagcagaggcaaactaacaactaagtactagcttttatgacaggc |
38643299 |
T |
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| Q |
492 |
tcagtggatgagaatgtaggattcatatgctgccagctatggtaacatgtgatttatatttaagaagccttgtgtttctgttgaattactaaaatactac |
591 |
Q |
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| T |
38643298 |
tcagtggatgagaatgtaggattcatatgctgccagctatggtaacatgtgatttatatttaagaagccttgtgtttttgttgaattactaaaatactac |
38643199 |
T |
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| Q |
592 |
tactcactat |
601 |
Q |
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|||||||||| |
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| T |
38643198 |
tactcactat |
38643189 |
T |
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