View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4783-Insertion-8 (Length: 599)
Name: NF4783-Insertion-8
Description: NF4783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4783-Insertion-8 |
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Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 8 - 475
Target Start/End: Original strand, 32898397 - 32898865
Alignment:
| Q |
8 |
agacttccatcttttgatggtttctacctcatttatactaatcacacatgactgcaaaaatgttgtaggttctgcatttatgtcaggg-aaaactatttc |
106 |
Q |
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| T |
32898397 |
agacttccatcttttgatggtttctacctcatttatactaatcacacatgactgcaaaaatgttgtaggttctgcatttatgttaggggaaaactatttc |
32898496 |
T |
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| Q |
107 |
ggctatgttttggggtatggtatctgaacgcacggtagaaaacttattttagttatatggtttatctcattgtaagtatatatgtcacatgaaatcatgc |
206 |
Q |
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| T |
32898497 |
ggctatgttttggggtatggtatctgaacacacgctagaaaacttattttagttgtatggtttatctcattgtaagtatatatgtcacatgaagtcatgc |
32898596 |
T |
|
| Q |
207 |
tttcatttgccattaagttatataatacatgttgtcctataacaaaaatggtgtttactttattccagggtcctcttcgacttgttttttggctttggta |
306 |
Q |
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| T |
32898597 |
tttcatttgccattaagttatataatacatgttgtcctataacaaaaatggtgtttactttattccagggtcctcttcaacttgttttttggctttggta |
32898696 |
T |
|
| Q |
307 |
aaaatataacgttgactttgatattcaaatttttccttggattcttaaatggttcaagtggacctgggagggtgannnnnnnnaaacctctttcgtttaa |
406 |
Q |
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| T |
32898697 |
aaaatataacgttgactttgatattcaaatttttccttggattcttaaatggttcaagtggaccggggagggtgattttttttaaacctctttcgtttaa |
32898796 |
T |
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| Q |
407 |
gtttaaatttgtatcattttatggttatatgttattctaataagtaactaatagcttctactaatatct |
475 |
Q |
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| T |
32898797 |
gtttaaatttgtatcattttatggttatatgttattctaataagtaactaatagcttctactaatatct |
32898865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 481 - 599
Target Start/End: Original strand, 32898934 - 32899052
Alignment:
| Q |
481 |
taaacatgtatgcctttgtaacctttgtctcatataattaattcaaatttattgttattagttgaaagtgtggtctgatttttggtctgtgcagctgcgg |
580 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
32898934 |
taaacatgtatgcctctgtaacctttgtctcatataattaattcaaatttattgttattagttgaaagtgtgatctgatttttggtctgtgcagctacgg |
32899033 |
T |
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| Q |
581 |
gagtagccacagtccttgg |
599 |
Q |
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| T |
32899034 |
gagtagccacagtccttgg |
32899052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 446
Target Start/End: Complemental strand, 36443053 - 36443009
Alignment:
| Q |
402 |
tttaagtttaaatttgtatcattttatggttatatgttattctaa |
446 |
Q |
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| T |
36443053 |
tttaagtttaaaattttgtcattttatggttatgtgttattctaa |
36443009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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