View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4783-Insertion-9 (Length: 587)

Name: NF4783-Insertion-9
Description: NF4783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4783-Insertion-9
NF4783-Insertion-9
[»] chr4 (19 HSPs)
chr4 (7-584)||(3549163-3549735)
chr4 (356-458)||(1408277-1408379)
chr4 (332-409)||(8328052-8328129)
chr4 (434-486)||(11917518-11917570)
chr4 (352-394)||(42461326-42461368)
chr4 (430-488)||(45128365-45128423)
chr4 (323-380)||(2811560-2811617)
chr4 (341-409)||(2996633-2996701)
chr4 (437-488)||(4071839-4071890)
chr4 (323-409)||(6428078-6428164)
chr4 (421-487)||(18630638-18630704)
chr4 (430-488)||(49219096-49219154)
chr4 (341-391)||(51560231-51560281)
chr4 (342-391)||(22471352-22471401)
chr4 (443-488)||(28232502-28232547)
chr4 (424-536)||(30207620-30207731)
chr4 (353-406)||(50742790-50742843)
chr4 (338-394)||(22523755-22523811)
chr4 (325-409)||(29375963-29376047)
[»] chr2 (23 HSPs)
chr2 (12-296)||(43811871-43812161)
chr2 (417-516)||(28933752-28933852)
chr2 (325-487)||(28803456-28803618)
chr2 (325-415)||(4350744-4350834)
chr2 (342-409)||(787392-787459)
chr2 (333-388)||(13869042-13869097)
chr2 (434-483)||(3423827-3423876)
chr2 (324-409)||(33192262-33192346)
chr2 (330-386)||(19978030-19978086)
chr2 (430-486)||(23143033-23143089)
chr2 (430-486)||(23554823-23554879)
chr2 (323-391)||(43529782-43529850)
chr2 (422-485)||(11513858-11513921)
chr2 (438-489)||(39929823-39929874)
chr2 (325-391)||(11513974-11514040)
chr2 (406-488)||(32694169-32694251)
chr2 (351-424)||(1318281-1318354)
chr2 (330-387)||(5759506-5759563)
chr2 (397-513)||(10143103-10143220)
chr2 (420-481)||(39983306-39983367)
chr2 (420-488)||(17952746-17952814)
chr2 (341-409)||(32837383-32837451)
chr2 (325-401)||(41170678-41170754)
[»] chr8 (15 HSPs)
chr8 (330-484)||(34770853-34771007)
chr8 (325-391)||(2487934-2488000)
chr8 (325-391)||(16162838-16162904)
chr8 (341-388)||(12833441-12833488)
chr8 (329-387)||(30191071-30191129)
chr8 (325-393)||(4560578-4560646)
chr8 (330-394)||(44236754-44236818)
chr8 (417-488)||(27728063-27728134)
chr8 (448-521)||(7026654-7026728)
chr8 (327-401)||(24326099-24326173)
chr8 (323-381)||(29417535-29417593)
chr8 (326-386)||(3953885-3953945)
chr8 (323-367)||(7008700-7008744)
chr8 (325-391)||(13958012-13958075)
chr8 (325-409)||(28769265-28769349)
[»] chr3 (23 HSPs)
chr3 (325-406)||(50015949-50016030)
chr3 (341-479)||(21872237-21872375)
chr3 (326-388)||(25699125-25699187)
chr3 (325-391)||(44014724-44014790)
chr3 (323-380)||(27294435-27294492)
chr3 (425-488)||(43116478-43116541)
chr3 (420-485)||(32555026-32555091)
chr3 (330-391)||(50211813-50211874)
chr3 (471-514)||(27294286-27294330)
chr3 (423-499)||(37788806-37788882)
chr3 (441-488)||(1395628-1395675)
chr3 (325-380)||(22667492-22667547)
chr3 (325-380)||(22724131-22724186)
chr3 (473-539)||(28283675-28283741)
chr3 (323-357)||(33046722-33046756)
chr3 (338-391)||(3776329-3776382)
chr3 (417-458)||(22214701-22214742)
chr3 (325-390)||(31365114-31365178)
chr3 (342-391)||(47584528-47584577)
chr3 (437-488)||(2318600-2318652)
chr3 (454-490)||(11613454-11613490)
chr3 (330-362)||(20685682-20685714)
chr3 (323-391)||(41057233-41057301)
[»] chr1 (16 HSPs)
chr1 (330-488)||(40304010-40304167)
chr1 (351-409)||(49692004-49692062)
chr1 (325-410)||(12763382-12763468)
chr1 (424-488)||(28467356-28467420)
chr1 (327-391)||(31517668-31517732)
chr1 (332-407)||(32515374-32515449)
chr1 (344-391)||(43371836-43371883)
chr1 (430-488)||(30371105-30371163)
chr1 (325-386)||(4549467-4549528)
chr1 (369-406)||(4576868-4576905)
chr1 (351-484)||(5421896-5422029)
chr1 (341-406)||(15709912-15709977)
chr1 (323-391)||(2295175-2295242)
chr1 (325-385)||(35017667-35017726)
chr1 (341-409)||(44422759-44422827)
chr1 (443-487)||(47877080-47877124)
[»] chr7 (13 HSPs)
chr7 (325-386)||(1418502-1418563)
chr7 (325-404)||(3836609-3836688)
chr7 (346-393)||(48131413-48131460)
chr7 (325-407)||(20547316-20547398)
chr7 (329-409)||(33894687-33894767)
chr7 (325-388)||(529443-529506)
chr7 (324-391)||(25670511-25670578)
chr7 (326-404)||(753034-753112)
chr7 (325-403)||(1422955-1423033)
chr7 (341-391)||(23214933-23214983)
chr7 (424-488)||(1417221-1417285)
chr7 (330-406)||(8094369-8094445)
chr7 (417-485)||(47046150-47046218)
[»] chr6 (13 HSPs)
chr6 (208-297)||(32997678-32997767)
chr6 (330-387)||(9833042-9833099)
chr6 (341-394)||(32205955-32206008)
chr6 (417-520)||(2727898-2728002)
chr6 (448-488)||(24782016-24782056)
chr6 (443-490)||(2027474-2027521)
chr6 (331-417)||(8420129-8420215)
chr6 (330-391)||(26559170-26559231)
chr6 (330-375)||(31774471-31774516)
chr6 (331-412)||(33887887-33887968)
chr6 (323-391)||(4308647-4308715)
chr6 (406-490)||(14492257-14492341)
chr6 (325-409)||(32171309-32171393)
[»] chr5 (20 HSPs)
chr5 (323-391)||(32849256-32849324)
chr5 (359-417)||(14422565-14422623)
chr5 (325-394)||(912573-912642)
chr5 (397-486)||(38047877-38047966)
chr5 (319-391)||(5377117-5377189)
chr5 (341-393)||(21782598-21782650)
chr5 (323-391)||(25720341-25720409)
chr5 (325-385)||(36326092-36326152)
chr5 (325-379)||(10771814-10771868)
chr5 (333-387)||(29336712-29336766)
chr5 (430-488)||(37526254-37526312)
chr5 (430-488)||(37588415-37588473)
chr5 (430-488)||(37690692-37690750)
chr5 (325-406)||(499657-499738)
chr5 (352-409)||(36639582-36639639)
chr5 (443-484)||(40120081-40120122)
chr5 (437-490)||(42181154-42181207)
chr5 (323-391)||(7907960-7908028)
chr5 (424-488)||(12595789-12595853)
chr5 (317-409)||(26516467-26516559)
[»] scaffold0015 (1 HSPs)
scaffold0015 (341-407)||(68921-68987)
[»] scaffold0019 (1 HSPs)
scaffold0019 (323-359)||(103886-103922)


Alignment Details
Target: chr4 (Bit Score: 530; Significance: 0; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 7 - 584
Target Start/End: Original strand, 3549163 - 3549735
Alignment:
Q  7 acttatgatgatgatcaggattgtctagataacttcaaagaccaaagtgaattctactatgtatcaaaagatgctgatgatccagataggtcaaatggga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3549163 acttatgatgatgatcaggattgtctagataacttcaaagaccaaagtgaattctactatgtatcaaaagatgctgatgatccagataggtcaaatggga 3549262  T
Q  107 aaaatgatgacaagtggtggttacctacacctaaagtacctgcagaaggtttatctgaagcagcaagaagatttttgcagtatcagaaagattgtgtgaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3549263 aaaatgatgacaagtggtggttacctacacctaaagtacctgcagaaggtttatctgaagcagcaagaagatttttgcagtatcagaaagattgtgtgaa 3549362  T
Q  207 tcaagtacttaaagcagcaatggctataaatgctcaaactctatcagaaatggagattcctgaaagctatattgaatccctacctaaggtatgtcaaaga 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3549363 tcaagtacttaaagcagcaatggctataaatgctcaaactctatcagaaatggagattcctgaaagctatattgaatccctacctaaggtatgtcaaaga 3549462  T
Q  307 gaatctgtgacagttcgaattggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgt 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3549463 gaatctgtgacagttcgaattggcttattttagtttatctattggcataagcacttatgagactgtttgagagaacttatgaaaatagtgtatgacatgt 3549562  T
Q  407 ccacaaactatctaggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttataaagaaacttatgcattag 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3549563 ccacaaactatctaggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttataaagaaacttatgcattag 3549662  T
Q  507 cacttatataataaaatgcttaattaagttgtttggtacaacgagggccgcctagtattttgctttagaagctatgtt 584  Q
    |||||||||||| ||| ||||||||||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||    
T  3549663 cacttatataat-aaacgcttaattaagttgttt-gtacaacgaggg-cgcctagta-tttgc-ttagaagctatgtt 3549735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 356 - 458
Target Start/End: Original strand, 1408277 - 1408379
Alignment:
Q  356 agcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtccacaaactatctaggatagctcatgaaagcaactcataggttatatga 455  Q
    |||||||||||| ||||||||||||| ||||||||| ||  ||| ||||||||| ||||| || | | ||||| |||||||||||| |||| ||||| ||    
T  1408277 agcacttatgagactgtttgagagaatttatgaaaacagcttattacatgtccataaactctcgaagttagcttatgaaagcaacttatagattatacga 1408376  T
Q  456 aaa 458  Q
    |||    
T  1408377 aaa 1408379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 332 - 409
Target Start/End: Original strand, 8328052 - 8328129
Alignment:
Q  332 tattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtcca 409  Q
    ||||| || ||||||||||||||||||||||||||| |||||||  | | |||||||||| | | |||||||||||||    
T  8328052 tatttgagcttatctattggcataagcacttatgagactgtttggaatagcttatgaaaacaatttatgacatgtcca 8328129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 486
Target Start/End: Complemental strand, 11917570 - 11917518
Alignment:
Q  434 aagcaactcataggttatatgaaaatcatttgatttgattttatcttttgtta 486  Q
    |||||||| ||||||||||||||||| |||||| || ||||||||||||||||    
T  11917570 aagcaacttataggttatatgaaaataatttgactttattttatcttttgtta 11917518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 394
Target Start/End: Complemental strand, 42461368 - 42461326
Alignment:
Q  352 cataagcacttatgaggctgtttgagagaacttatgaaaatag 394  Q
    |||||||||||||||| ||||||| ||||||||||||||||||    
T  42461368 cataagcacttatgagactgtttgggagaacttatgaaaatag 42461326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 488
Target Start/End: Original strand, 45128365 - 45128423
Alignment:
Q  430 atgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata 488  Q
    |||||| ||| | |||| |||||||| ||| ||||||||||||||||||||||||||||    
T  45128365 atgaaaacaatttatagcttatatgagaataatttgatttgattttatcttttgttata 45128423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 323 - 380
Target Start/End: Complemental strand, 2811617 - 2811560
Alignment:
Q  323 gaattggcttattttagtttatctattggcataagcacttatgaggctgtttgagaga 380  Q
    |||||| ||||||| || ||||||| ||||||||||| ||||||| ||||||||||||    
T  2811617 gaattgacttatttgaggttatctactggcataagcatttatgagactgtttgagaga 2811560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 409
Target Start/End: Complemental strand, 2996701 - 2996633
Alignment:
Q  341 ttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtcca 409  Q
    |||| ||||| ||||||||||| |||| |||||||||||| |||||||||| |   |||||||||||||    
T  2996701 ttatttattgacataagcacttttgagactgtttgagagagcttatgaaaacaacttatgacatgtcca 2996633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 488
Target Start/End: Complemental strand, 4071890 - 4071839
Alignment:
Q  437 caactcataggttatatgaaaatcatttgatttgattttatcttttgttata 488  Q
    ||||| |||| |||||||||||| |||||| || ||||||||||||||||||    
T  4071890 caacttatagcttatatgaaaataatttgactttattttatcttttgttata 4071839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 409
Target Start/End: Complemental strand, 6428164 - 6428078
Alignment:
Q  323 gaattggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtcca 409  Q
    |||||| ||||||| || |||| |||||| |||||||||| |||| | ||||||||||  ||||||||| |   |||||||||||||    
T  6428164 gaattgacttatttgagcttatatattggtataagcacttgtgagacagtttgagagagattatgaaaacaacttatgacatgtcca 6428078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 487
Target Start/End: Complemental strand, 18630704 - 18630638
Alignment:
Q  421 ggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttat 487  Q
    ||||||||  ||||| ||||| |||| ||||||||||| || |||| || |||||||||||||||||    
T  18630704 ggatagcttgtgaaaacaacttatagcttatatgaaaaccaattgactttattttatcttttgttat 18630638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 488
Target Start/End: Complemental strand, 49219154 - 49219096
Alignment:
Q  430 atgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata 488  Q
    |||||| ||||| |||| |||||||||||| |||||| || ||||||| ||||||||||    
T  49219154 atgaaaacaacttatagcttatatgaaaataatttgactttattttatattttgttata 49219096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 391
Target Start/End: Original strand, 51560231 - 51560281
Alignment:
Q  341 ttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaa 391  Q
    ||||||| ||||||||||||||||||| || |||| |||| ||||||||||    
T  51560231 ttatctactggcataagcacttatgagactctttgggagaccttatgaaaa 51560281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 22471401 - 22471352
Alignment:
Q  342 tatctattggcataagcacttatgaggctgtttgagagaacttatgaaaa 391  Q
    |||||| || ||||||||||| |||| ||||||| |||||||||||||||    
T  22471401 tatctactgacataagcacttgtgagactgtttgggagaacttatgaaaa 22471352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 488
Target Start/End: Complemental strand, 28232547 - 28232502
Alignment:
Q  443 ataggttatatgaaaatcatttgatttgattttatcttttgttata 488  Q
    |||| ||||||| |||| ||||||||||||||||||||||| ||||    
T  28232547 atagcttatatggaaataatttgatttgattttatcttttgctata 28232502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 536
Target Start/End: Original strand, 30207620 - 30207731
Alignment:
Q  424 tagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata-aagaaacttatgcattagcacttatataataaaa 522  Q
    ||||| |||||| ||||| |||| |||||||||||   |||||||| ||||||| |||||||||| ||  ||| ||| ||| ||||||||||| || ||     
T  30207620 tagcttatgaaaacaacttatagcttatatgaaaacagtttgattt-attttattttttgttatagaactaacatatacataagcacttatatgat-aag 30207717  T
Q  523 tgcttaattaagtt 536  Q
    ||||||||||||||    
T  30207718 tgcttaattaagtt 30207731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 406
Target Start/End: Original strand, 50742790 - 50742843
Alignment:
Q  353 ataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgt 406  Q
    |||||||||| | || ||||||||||||||||||||||| |||  |||||||||    
T  50742790 ataagcacttgttagactgtttgagagaacttatgaaaacagttcatgacatgt 50742843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 338 - 394
Target Start/End: Complemental strand, 22523811 - 22523755
Alignment:
Q  338 agtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatag 394  Q
    |||||||||| || |||||| |||| |||| |||||||||  |||||||||||||||    
T  22523811 agtttatctactgacataagtacttgtgagactgtttgagtcaacttatgaaaatag 22523755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 409
Target Start/End: Complemental strand, 29376047 - 29375963
Alignment:
Q  325 attggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtcca 409  Q
    |||||||||||| |  |||||||||| ||||||||||| ||| ||| ||| ||||| |||||| ||| ||  ||||||| |||||    
T  29376047 attggcttatttgaacttatctattgacataagcacttgtgacgctatttcagagagcttatggaaacagcttatgacaggtcca 29375963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 4e-49; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 12 - 296
Target Start/End: Complemental strand, 43812161 - 43811871
Alignment:
Q  12 tgatgatgatcaggattgtctagataacttcaaagaccaaagtgaattctactatgtatcaaaagatgctgatgatccagataggtca-aatgggaa--- 107  Q
    ||||||||| ||||| |||||||| ||||||||||| |||| ||| ||||| ||||||||||||||||| |||||| ||||  ||| | ||||  ||       
T  43812161 tgatgatgagcaggaatgtctagacaacttcaaagatcaaaatgagttctattatgtatcaaaagatgcagatgatgcagac-ggtgacaatgcaaagac 43812063  T
Q  108 aaa---tgatgacaagtggtggttacctacacctaaagtacctgcagaaggtttatctgaagcagcaagaagatttttgcagtatcagaaagattgtgtg 204  Q
    |||   |||||| || ||||||||||||||||| || || || ||||||||| ||||||| ||||| |||| |||||| || ||||||||||||||||||    
T  43812062 aaacagtgatgataaatggtggttacctacaccgaaggttccagcagaaggtctatctgatgcagctagaaaatttttacaatatcagaaagattgtgtg 43811963  T
Q  205 aatcaagtacttaaagcagcaatggctataaatgctcaaactctatcagaaatggagattcctgaaagctatattgaatccctacctaaggt 296  Q
    |||||||||||||||||||| ||||| |||||||||||   | | |||||||||||||| ||||| | ||||||||||||||| || |||||    
T  43811962 aatcaagtacttaaagcagccatggcaataaatgctcaggttttgtcagaaatggagatccctgagaactatattgaatccctccccaaggt 43811871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 417 - 516
Target Start/End: Complemental strand, 28933852 - 28933752
Alignment:
Q  417 tctaggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata-aagaaacttatgcattagcacttatat 515  Q
    |||||||||||| |||||| ||| | |||  ||| |||||||| |||||||||||||||||||||||||||| ||  | ||||| ||| |||||||||||    
T  28933852 tctaggatagcttatgaaaacaatttataacttaaatgaaaataatttgatttgattttatcttttgttatataaatagcttatacatgagcacttatat 28933753  T
Q  516 a 516  Q
    |    
T  28933752 a 28933752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 487
Target Start/End: Original strand, 28803456 - 28803618
Alignment:
Q  325 attggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtccacaaactatctaggat 424  Q
    |||| ||||||| || |||||||  ||||||||||| | |||| |||||||||||||| |||| ||| |   ||||||||||||| || || || |||||    
T  28803456 attgacttatttgagcttatctaccggcataagcacatgtgagactgtttgagagaacatatggaaacaacttatgacatgtccataagctctccaggat 28803555  T
Q  425 agctcatgaaagcaactcataggttatatgaaaatca-tttgatttgattttatcttttgttat 487  Q
    || | | |||| |||||  ||| ||||||| |||||| ||||| || |||||||||||||||||    
T  28803556 agtttaagaaaacaacttgtagcttatatg-aaatcagtttgactttattttatcttttgttat 28803618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 325 - 415
Target Start/End: Complemental strand, 4350834 - 4350744
Alignment:
Q  325 attggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtccacaaact 415  Q
    |||||||||||| || || |||| || |||||||||||| |||  |||||||||||||||||||||| ||  |||||||||| || |||||    
T  4350834 attggcttatttgagcttctctactgacataagcacttaagagattgtttgagagaacttatgaaaacagcttatgacatgttcataaact 4350744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 342 - 409
Target Start/End: Complemental strand, 787459 - 787392
Alignment:
Q  342 tatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtcca 409  Q
    |||||| |||||||||||||| |||  ||||||| ||||||||||||||| ||  |||||||||||||    
T  787459 tatctactggcataagcacttgtgacactgtttgtgagaacttatgaaaacagcttatgacatgtcca 787392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 333 - 388
Target Start/End: Original strand, 13869042 - 13869097
Alignment:
Q  333 attttagtttatctattggcataagcacttatgaggctgtttgagagaacttatga 388  Q
    |||||| |||||||| || |||||||||||||||| || |||||||||||||||||    
T  13869042 attttaatttatctactgacataagcacttatgagactatttgagagaacttatga 13869097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 434 - 483
Target Start/End: Original strand, 3423827 - 3423876
Alignment:
Q  434 aagcaactcataggttatatgaaaatcatttgatttgattttatcttttg 483  Q
    |||||||| ||||||||||||||||| |||||| || |||||||||||||    
T  3423827 aagcaacttataggttatatgaaaataatttgactttattttatcttttg 3423876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 324 - 409
Target Start/End: Complemental strand, 33192346 - 33192262
Alignment:
Q  324 aattggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtcca 409  Q
    ||||||||||||| || ||||||  || ||||| |||| ||||| |||||||| |||||||||||||| ||| |||||||| ||||    
T  33192346 aattggcttatttgagcttatctgctgacataaacactcatgagactgtttga-agaacttatgaaaacagtttatgacatatcca 33192262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 386
Target Start/End: Complemental strand, 19978086 - 19978030
Alignment:
Q  330 cttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttat 386  Q
    ||||||||||||||||||||   ||||||||||  ||| ||||||||||||||||||    
T  19978086 cttattttagtttatctattaaaataagcacttgcgagactgtttgagagaacttat 19978030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 486
Target Start/End: Original strand, 23143033 - 23143089
Alignment:
Q  430 atgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgtta 486  Q
    |||||| ||||| |||| ||||| |||||  ||||||||||||||||||||||||||    
T  23143033 atgaaaacaactaatagcttataagaaaacaatttgatttgattttatcttttgtta 23143089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 486
Target Start/End: Original strand, 23554823 - 23554879
Alignment:
Q  430 atgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgtta 486  Q
    |||||| ||||| |||| ||||| |||||  ||||||||||||||||||||||||||    
T  23554823 atgaaaacaactaatagcttataagaaaacaatttgatttgattttatcttttgtta 23554879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 391
Target Start/End: Original strand, 43529782 - 43529850
Alignment:
Q  323 gaattggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaa 391  Q
    |||||| ||||||| || ||||||||||| |||||||||| |||  ||||||| ||||| |||||||||    
T  43529782 gaattgacttatttgagcttatctattggtataagcacttctgacactgtttgggagaatttatgaaaa 43529850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 485
Target Start/End: Complemental strand, 11513921 - 11513858
Alignment:
Q  422 gatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgtt 485  Q
    ||||||| |||||| ||||| |||| |||||||||||  |||||| || |||||||||||||||    
T  11513921 gatagcttatgaaaacaacttatagcttatatgaaaacaatttgactttattttatcttttgtt 11513858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 489
Target Start/End: Complemental strand, 39929874 - 39929823
Alignment:
Q  438 aactcataggttatatgaaaatcatttgatttgattttatcttttgttataa 489  Q
    |||| |||| |||||| ||||  |||||||||||||||||||||||||||||    
T  39929874 aacttatagcttatataaaaacaatttgatttgattttatcttttgttataa 39929823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 391
Target Start/End: Complemental strand, 11514040 - 11513974
Alignment:
Q  325 attggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaa 391  Q
    ||||| |||||| || ||||||| | |||||||||||| |||| |||||| ||||| ||||||||||    
T  11514040 attggtttatttgagattatctactagcataagcacttgtgagactgttttagagagcttatgaaaa 11513974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 488
Target Start/End: Complemental strand, 32694251 - 32694169
Alignment:
Q  406 tccacaaactatctaggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata 488  Q
    ||||||| ||||||||||||||| ||| || ||||| |||  |||||| |||||  | |||||| ||||||||||||| ||||    
T  32694251 tccacaatctatctaggatagcttatgcaaacaacttataaattatataaaaatagtctgattttattttatcttttgatata 32694169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 424
Target Start/End: Complemental strand, 1318354 - 1318281
Alignment:
Q  351 gcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtccacaaactatctaggat 424  Q
    |||||||||||| |||| ||||||| |||| |||||||||| |   ||||||||||||| || || ||||||||    
T  1318354 gcataagcacttgtgagactgtttgtgagagcttatgaaaacatcttatgacatgtccagaagctctctaggat 1318281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 387
Target Start/End: Original strand, 5759506 - 5759563
Alignment:
Q  330 cttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatg 387  Q
    ||||||| |||||||||||||| ||||| |||| |||| ||||||| |||| ||||||    
T  5759506 cttatttgagtttatctattggtataagtacttgtgagactgtttgggagagcttatg 5759563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 513
Target Start/End: Complemental strand, 10143220 - 10143103
Alignment:
Q  397 tatgacatgtccacaaactatctaggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata-aagaaac 495  Q
    |||||||| |||| ||||| || | ||||||| ||||||  |||| |||| |||||| ||||   ||||| || |||||||||||||||||| ||  |||    
T  10143220 tatgacatatccataaactctccatgatagcttatgaaaaaaacttatagcttatataaaaacagtttgacttaattttatcttttgttatagaaataac 10143121  T
Q  496 ttatgcattagcacttat 513  Q
    |||| ||| |||||||||    
T  10143120 ttatacataagcacttat 10143103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 481
Target Start/End: Complemental strand, 39983367 - 39983306
Alignment:
Q  420 aggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttt 481  Q
    ||||||||| |||||| ||||| |||| |||||||||||| |||| |||| |||||| ||||    
T  39983367 aggatagcttatgaaaacaacttatagcttatatgaaaattattttattttattttaccttt 39983306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 488
Target Start/End: Original strand, 17952746 - 17952814
Alignment:
Q  420 aggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata 488  Q
    ||||||||| |||||| || ||  ||| ||||||||||||  ||||| || ||||||||||||||||||    
T  17952746 aggatagcttatgaaaacatcttgtagcttatatgaaaatagtttgactttattttatcttttgttata 17952814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 341 - 409
Target Start/End: Complemental strand, 32837451 - 32837383
Alignment:
Q  341 ttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtcca 409  Q
    ||||||| ||| ||||| |||| |||| ||||||| ||||||||||||||| ||  ||| |||||||||    
T  32837451 ttatctagtggtataagtacttgtgagactgtttgggagaacttatgaaaacagcttataacatgtcca 32837383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 401
Target Start/End: Complemental strand, 41170754 - 41170678
Alignment:
Q  325 attggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatga 401  Q
    |||||||||||| |||||||||| |  ||||| ||||| |||| || ||||  | |||||||||||||||| |||||    
T  41170754 attggcttatttgagtttatctactaacataaacacttgtgagactatttggaataacttatgaaaatagtttatga 41170678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 330 - 484
Target Start/End: Complemental strand, 34771007 - 34770853
Alignment:
Q  330 cttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtccacaaactatctaggatagctc 429  Q
    ||||||| |||||||||  | |||||||||||| |||  |||||||||||| | |||||||| ||  |||||||||||||  |||| ||||||||||||     
T  34771007 cttatttgagtttatctgctagcataagcacttgtgaaactgtttgagagatcctatgaaaacagcttatgacatgtccatgaactctctaggatagctt 34770908  T
Q  430 atgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgt 484  Q
    |||||| ||||| |||| ||| |||||||  |||||| || ||||||||||||||    
T  34770907 atgaaaacaacttatagcttaaatgaaaacaatttgactttattttatcttttgt 34770853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 325 - 391
Target Start/End: Original strand, 2487934 - 2488000
Alignment:
Q  325 attggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaa 391  Q
    |||||||||||| |||| ||||| || ||||||||||| |||| ||||||| |||||||||||||||    
T  2487934 attggcttatttgagttcatctactgacataagcacttgtgagactgtttgggagaacttatgaaaa 2488000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 325 - 391
Target Start/End: Complemental strand, 16162904 - 16162838
Alignment:
Q  325 attggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaa 391  Q
    |||||||||||| |||||||||| | |||||| ||||| |||| |||||||||| ||||||||||||    
T  16162904 attggcttatttgagtttatctactagcataaacacttgtgagactgtttgagaaaacttatgaaaa 16162838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 341 - 388
Target Start/End: Complemental strand, 12833488 - 12833441
Alignment:
Q  341 ttatctattggcataagcacttatgaggctgtttgagagaacttatga 388  Q
    |||||||||||||||||||||| |||| |||||||||||||| |||||    
T  12833488 ttatctattggcataagcacttgtgagactgtttgagagaacatatga 12833441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 387
Target Start/End: Original strand, 30191071 - 30191129
Alignment:
Q  329 gcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatg 387  Q
    |||||||| ||||||||||||||||||||||||| | || ||||||| |||| ||||||    
T  30191071 gcttatttgagtttatctattggcataagcacttgttagactgtttgggagagcttatg 30191129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 393
Target Start/End: Complemental strand, 4560646 - 4560578
Alignment:
Q  325 attggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaata 393  Q
    |||| ||||||| || |||||||||| ||||||||||| ||||| ||||||  |||||||||| |||||    
T  4560646 attgacttatttgagcttatctattgacataagcacttgtgaggttgtttggaagaacttatggaaata 4560578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 394
Target Start/End: Original strand, 44236754 - 44236818
Alignment:
Q  330 cttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatag 394  Q
    ||||||| |||||||||| |||||||||||||| |||| ||||| | |||||  |||||||||||    
T  44236754 cttatttgagtttatctactggcataagcacttgtgagactgttcgggagaatctatgaaaatag 44236818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 488
Target Start/End: Original strand, 27728063 - 27728134
Alignment:
Q  417 tctaggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata 488  Q
    |||||||||||| |||||| ||||| |||  ||||||||||||  ||||| || |||||||||||| |||||    
T  27728063 tctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatctttttttata 27728134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 521
Target Start/End: Complemental strand, 7026728 - 7026654
Alignment:
Q  448 ttatatgaaaatcatttgatttgattttatcttttgttataa-agaaacttatgcattagcacttatataataaa 521  Q
    |||||||||||  |||| | || ||||||||||||||||||| || | ||||||||| ||||||||||| |||||    
T  7026728 ttatatgaaaacaattttactttattttatcttttgttataacagtagcttatgcataagcacttatatgataaa 7026654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 401
Target Start/End: Complemental strand, 24326173 - 24326099
Alignment:
Q  327 tggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatga 401  Q
    ||||| |||| || ||||||| |||||||||||||| |||| ||||||| |||| |||||| ||| ||| |||||    
T  24326173 tggctaatttgagcttatctactggcataagcacttgtgagactgtttgggagagcttatggaaacagtttatga 24326099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 381
Target Start/End: Original strand, 29417535 - 29417593
Alignment:
Q  323 gaattggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaa 381  Q
    ||||||||||||||||| ||||| |  | ||||| ||||| ||||||||||||||||||    
T  29417535 gaattggcttattttagcttatcgaccgacataaacacttgtgaggctgtttgagagaa 29417593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 326 - 386
Target Start/End: Complemental strand, 3953945 - 3953885
Alignment:
Q  326 ttggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttat 386  Q
    ||||||||||| ||  |||||| |||||||||||||| |||  ||||||| ||||||||||    
T  3953945 ttggcttatttgagcctatctactggcataagcacttgtgaaactgtttgggagaacttat 3953885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 7008744 - 7008700
Alignment:
Q  323 gaattggcttattttagtttatctattggcataagcacttatgag 367  Q
    |||||| ||||||| |||||||||| |||||||||||||| ||||    
T  7008744 gaattgacttatttgagtttatctactggcataagcacttgtgag 7008700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 391
Target Start/End: Original strand, 13958012 - 13958075
Alignment:
Q  325 attggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaa 391  Q
    ||||||||| || ||||||||||||||||||||   || ||||| |||||| |||||||| ||||||    
T  13958012 attggcttacttgagtttatctattggcataag---ttttgaggttgtttgggagaacttttgaaaa 13958075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 409
Target Start/End: Original strand, 28769265 - 28769349
Alignment:
Q  325 attggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtcca 409  Q
    |||| ||||||||||  |||||| |||||||||||||| ||||  | ||||||||| ||| || ||||||  ||||| |||||||    
T  28769265 attgtcttattttaggctatctactggcataagcacttgtgagattatttgagagagcttgtgtaaatagcatatgatatgtcca 28769349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 325 - 406
Target Start/End: Complemental strand, 50016030 - 50015949
Alignment:
Q  325 attggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgt 406  Q
    |||||||||| | ||||||||||||||||||| ||||| |||| ||||||||||||||||||||||| |  |||||||||||    
T  50016030 attggcttatctcagtttatctattggcataaacacttgtgagactgtttgagagaacttatgaaaagaacgtatgacatgt 50015949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 341 - 479
Target Start/End: Original strand, 21872237 - 21872375
Alignment:
Q  341 ttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtccacaaactatctaggatagctcatgaaagcaac 440  Q
    ||||||| || ||||||||||| |||| |||||||  | | ||| |||||||||  ||||||||||||| ||||| || ||||||||| |||||| ||||    
T  21872237 ttatctactgacataagcacttgtgagactgtttggaaaagcttttgaaaatagcttatgacatgtccataaactttccaggatagcttatgaaaacaac 21872336  T
Q  441 tcataggttatatgaaaatcatttgatttgattttatct 479  Q
    | |||| |||||| ||||  ||||||  | |||||||||    
T  21872337 ttatagcttatatcaaaaaaatttgaccttattttatct 21872375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 326 - 388
Target Start/End: Original strand, 25699125 - 25699187
Alignment:
Q  326 ttggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatga 388  Q
    ||||||||||| ||||||||||||| |||||||||||||||| ||  |||||||| |||||||    
T  25699125 ttggcttatttgagtttatctattgacataagcacttatgagacttcttgagagagcttatga 25699187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 325 - 391
Target Start/End: Original strand, 44014724 - 44014790
Alignment:
Q  325 attggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaa 391  Q
    |||||||||||| |||||||||| | |||||| ||||| |||| |||||||||| ||||||||||||    
T  44014724 attggcttatttgagtttatctactagcataaacacttgtgagactgtttgagaaaacttatgaaaa 44014790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 323 - 380
Target Start/End: Complemental strand, 27294492 - 27294435
Alignment:
Q  323 gaattggcttattttagtttatctattggcataagcacttatgaggctgtttgagaga 380  Q
    ||||||||||| || ||||||||||||| ||||||||||| |||| ||||||||||||    
T  27294492 gaattggcttacttgagtttatctattgtcataagcacttgtgagactgtttgagaga 27294435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 425 - 488
Target Start/End: Original strand, 43116478 - 43116541
Alignment:
Q  425 agctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata 488  Q
    |||| |||||| | ||| |||| ||||||||||||  |||||||||||||||||||||||||||    
T  43116478 agcttatgaaaacgacttatagcttatatgaaaattgtttgatttgattttatcttttgttata 43116541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 420 - 485
Target Start/End: Original strand, 32555026 - 32555091
Alignment:
Q  420 aggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgtt 485  Q
    |||||| ||||||||| ||||| |||| ||||| |||||| |||||| || |||||||||||||||    
T  32555026 aggataactcatgaaaacaacttatagcttataggaaaataatttgactttattttatcttttgtt 32555091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 330 - 391
Target Start/End: Complemental strand, 50211874 - 50211813
Alignment:
Q  330 cttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaa 391  Q
    |||||||||| ||||||| |  ||||||||||| | || |||||||||||||||||||||||    
T  50211874 cttattttagcttatctactaacataagcacttgtaagactgtttgagagaacttatgaaaa 50211813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 471 - 514
Target Start/End: Complemental strand, 27294330 - 27294286
Alignment:
Q  471 attttatcttttgttata-aagaaacttatgcattagcacttata 514  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||    
T  27294330 attttatcttttgttatagaagaaacttatgcataagcacttata 27294286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 499
Target Start/End: Complemental strand, 37788882 - 37788806
Alignment:
Q  423 atagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttataaagaaacttat 499  Q
    |||||| |||||| ||||| |||| ||||| |||||| ||| || || ||||||||||||||||||||  |||||||    
T  37788882 atagcttatgaaaacaacttatagattatacgaaaataattggactttattttatcttttgttataaaataacttat 37788806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 488
Target Start/End: Complemental strand, 1395675 - 1395628
Alignment:
Q  441 tcataggttatatgaaaatcatttgatttgattttatcttttgttata 488  Q
    |||||| |||||||||||| |||||| || ||||||||||||||||||    
T  1395675 tcatagcttatatgaaaataatttgactttattttatcttttgttata 1395628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 380
Target Start/End: Complemental strand, 22667547 - 22667492
Alignment:
Q  325 attggcttattttagtttatctattggcataagcacttatgaggctgtttgagaga 380  Q
    |||||||||||| || ||||||| || ||||||||||| |||| ||||||||||||    
T  22667547 attggcttatttgagcttatctactgacataagcacttgtgagactgtttgagaga 22667492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 380
Target Start/End: Complemental strand, 22724186 - 22724131
Alignment:
Q  325 attggcttattttagtttatctattggcataagcacttatgaggctgtttgagaga 380  Q
    |||||||||||| || ||||||| || ||||||||||| |||| ||||||||||||    
T  22724186 attggcttatttgagcttatctactgacataagcacttgtgagactgtttgagaga 22724131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 539
Target Start/End: Original strand, 28283675 - 28283741
Alignment:
Q  473 tttatcttttgttata-aagaaacttatgcattagcacttatataataaaatgcttaattaagttgtt 539  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||| || ||| |||||||| |||||||    
T  28283675 tttatcttttgttatagaagtaacttatgcataagcacttatatgat-aaacgcttaattgagttgtt 28283741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 33046722 - 33046756
Alignment:
Q  323 gaattggcttattttagtttatctattggcataag 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  33046722 gaattggcttattttagtttatctactggcataag 33046756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 3776329 - 3776382
Alignment:
Q  338 agtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaa 391  Q
    |||||||||| ||||||||| | || ||||  ||||||||||||||||||||||    
T  3776329 agtttatctactggcataagtaattgtgagaatgtttgagagaacttatgaaaa 3776382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 458
Target Start/End: Original strand, 22214701 - 22214742
Alignment:
Q  417 tctaggatagctcatgaaagcaactcataggttatatgaaaa 458  Q
    |||||||||||| |||||| ||||| ||||||||||||||||    
T  22214701 tctaggatagcttatgaaaacaacttataggttatatgaaaa 22214742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 390
Target Start/End: Original strand, 31365114 - 31365178
Alignment:
Q  325 attggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaa 390  Q
    |||||||||||| || |||||||||||||||||   || |||| ||||||| ||||||||||||||    
T  31365114 attggcttatttgagcttatctattggcataag-ttttgtgagactgtttgggagaacttatgaaa 31365178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 47584577 - 47584528
Alignment:
Q  342 tatctattggcataagcacttatgaggctgtttgagagaacttatgaaaa 391  Q
    ||||||||| ||||||||||| |||| || ||||||||| ||||||||||    
T  47584577 tatctattgacataagcacttgtgagactatttgagagagcttatgaaaa 47584528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 437 - 488
Target Start/End: Complemental strand, 2318652 - 2318600
Alignment:
Q  437 caactcataggttatatgaaaatcatttgatttgattttatctt-ttgttata 488  Q
    ||||| |||| |||||||||||  |||||||||||||||||||| ||||||||    
T  2318652 caacttatagtttatatgaaaacaatttgatttgattttatcttgttgttata 2318600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 490
Target Start/End: Complemental strand, 11613490 - 11613454
Alignment:
Q  454 gaaaatcatttgatttgattttatcttttgttataaa 490  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  11613490 gaaaataatttgattttattttatcttttgttataaa 11613454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 330 - 362
Target Start/End: Complemental strand, 20685714 - 20685682
Alignment:
Q  330 cttattttagtttatctattggcataagcactt 362  Q
    ||||||| |||||||||||||||||||||||||    
T  20685714 cttatttgagtttatctattggcataagcactt 20685682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 391
Target Start/End: Complemental strand, 41057301 - 41057233
Alignment:
Q  323 gaattggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaa 391  Q
    |||||||||||||| || |||||||   |||||||||||| |||| ||||||| ||||| || ||||||    
T  41057301 gaattggcttatttgagcttatctacatgcataagcacttgtgagactgtttgggagaatttgtgaaaa 41057233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 488
Target Start/End: Original strand, 40304010 - 40304167
Alignment:
Q  330 cttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtccacaaactatctaggatagctc 429  Q
    ||||||| || ||||||| |||||||||||  | ||||  |||||| || |||||| ||| ||||  ||||||||| ||| |||||||||||||||| |     
T  40304010 cttatttcagattatctactggcataagcatgtctgagattgtttgggataacttacgaatatagcttatgacatgcccataaactatctaggatag-tt 40304108  T
Q  430 atgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata 488  Q
    |||||| || || |||  |||||||||||  || |||||| ||||||||||||||||||    
T  40304109 atgaaaacagcttataacttatatgaaaacaatgtgattttattttatcttttgttata 40304167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 351 - 409
Target Start/End: Original strand, 49692004 - 49692062
Alignment:
Q  351 gcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtcca 409  Q
    ||||||| |||| |||| ||||||||||||||||||||||||||  |||||||||||||    
T  49692004 gcataagaacttgtgagactgtttgagagaacttatgaaaatagcttatgacatgtcca 49692062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 410
Target Start/End: Complemental strand, 12763468 - 12763382
Alignment:
Q  325 attggcttatttt-agtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtccac 410  Q
    ||||||||||||| |||||||||||| ||||||||| || | || ||||||  ||||||||| ||||| ||  ||||||||||||||    
T  12763468 attggcttattttgagtttatctattagcataagcatttgtaagactgttttggagaacttacgaaaacagcttatgacatgtccac 12763382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 28467356 - 28467420
Alignment:
Q  424 tagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata 488  Q
    ||||| |||||| |||||  ||| |||||||||||| |||||| || ||||||||||||||||||    
T  28467356 tagcttatgaaaacaacttgtagcttatatgaaaataatttgactttattttatcttttgttata 28467420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 391
Target Start/End: Original strand, 31517668 - 31517732
Alignment:
Q  327 tggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaa 391  Q
    |||||||||| || |||| || |||||||||||||| |||| ||||||| |||||||||| ||||    
T  31517668 tggcttatttgagcttatttactggcataagcacttgtgagactgtttgggagaacttatcaaaa 31517732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 407
Target Start/End: Original strand, 32515374 - 32515449
Alignment:
Q  332 tattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtc 407  Q
    ||||| |||||||||| |  ||||||||||| |||| ||||||| |||| |||||| ||| || ||||||||||||    
T  32515374 tatttgagtttatctactaacataagcacttgtgagactgtttgggagagcttatggaaacagcgtatgacatgtc 32515449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 391
Target Start/End: Original strand, 43371836 - 43371883
Alignment:
Q  344 tctattggcataagcacttatgaggctgtttgagagaacttatgaaaa 391  Q
    |||| |||||||||||||| |||| |||||||||||| ||||||||||    
T  43371836 tctactggcataagcacttgtgagactgtttgagagagcttatgaaaa 43371883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 488
Target Start/End: Complemental strand, 30371163 - 30371105
Alignment:
Q  430 atgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata 488  Q
    |||||| ||||| |||| |||||||||||  |||||| || ||||||||||||||||||    
T  30371163 atgaaaacaacttatagcttatatgaaaacaatttgagtttattttatcttttgttata 30371105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 386
Target Start/End: Original strand, 4549467 - 4549528
Alignment:
Q  325 attggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttat 386  Q
    |||||||||||| || ||||||| ||||||||||| || |||| ||||||| |||| |||||    
T  4549467 attggcttatttgagattatctactggcataagcatttctgagactgtttgggagagcttat 4549528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 406
Target Start/End: Complemental strand, 4576905 - 4576868
Alignment:
Q  369 ctgtttgagagaacttatgaaaatagtgtatgacatgt 406  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  4576905 ctgtttgagacaacttatgaaaatagtttatgacatgt 4576868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 484
Target Start/End: Original strand, 5421896 - 5422029
Alignment:
Q  351 gcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtccacaaactatctaggatagctcatgaaagcaactcataggtta 450  Q
    |||||||||||| |||| | ||||| |||||||||| |||| ||| || |||||||    || || |||| ||||||| || ||| ||||| |||| |||    
T  5421896 gcataagcacttgtgagaccgtttgtgagaacttataaaaacagtttaagacatgtttgtaagctctctaagatagcttatcaaaacaacttatagctta 5421995  T
Q  451 tatgaaaatcatttgatttgattttatcttttgt 484  Q
    || |||||  |||||| |  ||||||||||||||    
T  5421996 taagaaaacaatttgactatattttatcttttgt 5422029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 406
Target Start/End: Complemental strand, 15709977 - 15709912
Alignment:
Q  341 ttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgt 406  Q
    ||||||| | |||||||||||| |||| ||||||| ||||||||| | ||||||  ||||||||||    
T  15709977 ttatctactagcataagcacttttgagactgtttgggagaacttacggaaatagcttatgacatgt 15709912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 391
Target Start/End: Complemental strand, 2295242 - 2295175
Alignment:
Q  323 gaattggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaa 391  Q
    |||||||||||||| || ||||||| |||||||||   || |||| ||||||| |||||||||||||||    
T  2295242 gaattggcttatttgagcttatctactggcataag-ttttgtgagactgtttgggagaacttatgaaaa 2295175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 385
Target Start/End: Complemental strand, 35017726 - 35017667
Alignment:
Q  325 attggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaactta 385  Q
    |||||||||||| || |||||||||||||||| ||||| ||||  |||||| |||||||||    
T  35017726 attggcttatttgagcttatctattggcataaacacttgtgagattgtttg-gagaactta 35017667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 341 - 409
Target Start/End: Complemental strand, 44422827 - 44422759
Alignment:
Q  341 ttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtcca 409  Q
    ||||||| ||| |||| ||||| |||| |||| || |||| |||||||||||||  |||||||||||||    
T  44422827 ttatctactgggataaacacttttgagactgtctgggagagcttatgaaaatagcttatgacatgtcca 44422759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 487
Target Start/End: Complemental strand, 47877124 - 47877080
Alignment:
Q  443 ataggttatatgaaaatcatttgatttgattttatcttttgttat 487  Q
    |||| |||||||||||  ||||||||| |||||||||||||||||    
T  47877124 atagtttatatgaaaacaatttgattttattttatcttttgttat 47877080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 325 - 386
Target Start/End: Complemental strand, 1418563 - 1418502
Alignment:
Q  325 attggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttat 386  Q
    |||| ||||||| || ||||||| ||||||||||||||||||||||||||| |||| |||||    
T  1418563 attgacttatttgagcttatctactggcataagcacttatgaggctgtttgtgagagcttat 1418502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 325 - 404
Target Start/End: Original strand, 3836609 - 3836688
Alignment:
Q  325 attggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacat 404  Q
    |||| ||||||| || ||||||| |||| ||||||||| |||  ||||||| ||||||||||||||||||  ||||||||    
T  3836609 attgccttatttgagcttatctactggcttaagcacttgtgaaactgtttgggagaacttatgaaaatagcttatgacat 3836688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 393
Target Start/End: Complemental strand, 48131460 - 48131413
Alignment:
Q  346 tattggcataagcacttatgaggctgtttgagagaacttatgaaaata 393  Q
    |||||||||||||||||||||| |||||||  ||||||||||||||||    
T  48131460 tattggcataagcacttatgagactgtttggaagaacttatgaaaata 48131413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 407
Target Start/End: Original strand, 20547316 - 20547398
Alignment:
Q  325 attggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtc 407  Q
    ||||||||||||||||||||||| || ||||| ||||| |||  |||||||||||| |||||| | | ||  |||||||||||    
T  20547316 attggcttattttagtttatctaatgacataaacacttgtgatactgtttgagagagcttatggagacagcctatgacatgtc 20547398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 409
Target Start/End: Complemental strand, 33894767 - 33894687
Alignment:
Q  329 gcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtcca 409  Q
    |||||||| || ||||| | || ||||||||||| |||| ||||||| |||| |||||||||| ||  |||||||||||||    
T  33894767 gcttatttgagcttatcaaatgacataagcacttgtgagactgtttgtgagagcttatgaaaacagcatatgacatgtcca 33894687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 388
Target Start/End: Complemental strand, 529506 - 529443
Alignment:
Q  325 attggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatga 388  Q
    |||| ||||||| || ||||||| |||||||| ||||| ||||||| |||| ||||||||||||    
T  529506 attgacttatttgagcttatctactggcataaacacttgtgaggctatttgggagaacttatga 529443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 391
Target Start/End: Original strand, 25670511 - 25670578
Alignment:
Q  324 aattggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaa 391  Q
    ||||| |||| || || |||||||||| ||||||| ||| |||| |||||||||| ||||||||||||    
T  25670511 aattgacttacttgagcttatctattgacataagctcttgtgagactgtttgagaaaacttatgaaaa 25670578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 404
Target Start/End: Complemental strand, 753112 - 753034
Alignment:
Q  326 ttggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacat 404  Q
    ||||||||||| || ||||||| | |||||||||| | | || ||| |||| |||||||||||||| ||| ||||||||    
T  753112 ttggcttatttgagcttatctacttgcataagcacctctaagactgattgaaagaacttatgaaaacagtttatgacat 753034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 403
Target Start/End: Complemental strand, 1423033 - 1422955
Alignment:
Q  325 attggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgaca 403  Q
    |||| ||||||| ||| | |||||||| |||  ||||||||||  ||||| ||||| |||||||||||||| |||||||    
T  1423033 attgacttatttgagtctctctattggtatagacacttatgagattgtttaagagagcttatgaaaatagtttatgaca 1422955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 391
Target Start/End: Complemental strand, 23214983 - 23214933
Alignment:
Q  341 ttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaa 391  Q
    ||||||| | |||||| |||||||||| ||||||||||||| |||||||||    
T  23214983 ttatctactagcataaacacttatgagactgtttgagagaatttatgaaaa 23214933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 1417285 - 1417221
Alignment:
Q  424 tagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata 488  Q
    ||||| |||||| ||||| || | |||||||||||  |||||| || ||||||||||||||||||    
T  1417285 tagcttatgaaaacaacttattgcttatatgaaaacaatttgactttattttatcttttgttata 1417221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 330 - 406
Target Start/End: Complemental strand, 8094445 - 8094369
Alignment:
Q  330 cttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgt 406  Q
    ||||||| || ||||||| | |||||||||||| |||| || |||||||||  ||||||||| ||  ||||||||||    
T  8094445 cttatttgagcttatctactagcataagcacttgtgagactatttgagagattttatgaaaacagcttatgacatgt 8094369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 485
Target Start/End: Original strand, 47046150 - 47046218
Alignment:
Q  417 tctaggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgtt 485  Q
    |||||||||||| |||||| ||||||  || |||||||||||  |||||| || |||||||| ||||||    
T  47046150 tctaggatagcttatgaaaacaactcggagcttatatgaaaacaatttgactttattttatcctttgtt 47046218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 208 - 297
Target Start/End: Complemental strand, 32997767 - 32997678
Alignment:
Q  208 caagtacttaaagcagcaatggctataaatgctcaaactctatcagaaatggagattcctgaaagctatattgaatccctacctaaggta 297  Q
    ||||||||||||||||| ||||| ||||||||||||   |||||||| |||||||| ||||| | ||| || ||||| || |||||||||    
T  32997767 caagtacttaaagcagccatggcaataaatgctcaagtactatcagagatggagatacctgacaactacatcgaatctctccctaaggta 32997678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 330 - 387
Target Start/End: Original strand, 9833042 - 9833099
Alignment:
Q  330 cttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatg 387  Q
    ||||||| ||||||||||||||| |||| ||||||||| || ||||||||| ||||||    
T  9833042 cttatttgagtttatctattggcgtaagtacttatgagactatttgagagatcttatg 9833099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 341 - 394
Target Start/End: Original strand, 32205955 - 32206008
Alignment:
Q  341 ttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatag 394  Q
    ||||||| | ||||||| |||||| ||||| |||||||||||||||||||||||    
T  32205955 ttatctactagcataagtacttataaggctttttgagagaacttatgaaaatag 32206008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 520
Target Start/End: Original strand, 2727898 - 2728002
Alignment:
Q  417 tctaggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata-aagaaacttatgcattagcacttatat 515  Q
    |||||||||||| |||||| ||||| |||| |||||| || |  |||||||||   |||||||||||||||| ||| | ||||| ||| |||||||||||    
T  2727898 tctaggatagcttatgaaaacaacttatagcttatatcaatacaatttgatttttgtttatcttttgttatagaagcagcttatacataagcacttatat 2727997  T
Q  516 aataa 520  Q
     ||||    
T  2727998 gataa 2728002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 448 - 488
Target Start/End: Complemental strand, 24782056 - 24782016
Alignment:
Q  448 ttatatgaaaatcatttgatttgattttatcttttgttata 488  Q
    |||||||||||  ||||||||||||||||||||||||||||    
T  24782056 ttatatgaaaacaatttgatttgattttatcttttgttata 24782016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 490
Target Start/End: Original strand, 2027474 - 2027521
Alignment:
Q  443 ataggttatatgaaaatcatttgatttgattttatcttttgttataaa 490  Q
    |||||||||||||||||  ||||| || ||||||||||||||||||||    
T  2027474 ataggttatatgaaaatagtttgactttattttatcttttgttataaa 2027521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 417
Target Start/End: Original strand, 8420129 - 8420215
Alignment:
Q  331 ttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtccacaaactat 417  Q
    |||||| || |||||||||| ||||| ||||| |||| ||||| | |||| |||||  ||||||  |||||||||||||||| ||||    
T  8420129 ttatttgagcttatctattgacataaacacttgtgagactgttagtgagagcttatagaaatagcttatgacatgtccacaagctat 8420215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 391
Target Start/End: Original strand, 26559170 - 26559231
Alignment:
Q  330 cttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaa 391  Q
    ||||||| |||||| ||| ||||||||||| || |||| |||||||  ||||||||||||||    
T  26559170 cttatttgagtttacctactggcataagcatttgtgagactgtttggaagaacttatgaaaa 26559231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 375
Target Start/End: Complemental strand, 31774516 - 31774471
Alignment:
Q  330 cttattttagtttatctattggcataagcacttatgaggctgtttg 375  Q
    ||||||| ||||||||||  |||||||||||||||||| |||||||    
T  31774516 cttatttgagtttatctaccggcataagcacttatgagactgtttg 31774471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 412
Target Start/End: Complemental strand, 33887968 - 33887887
Alignment:
Q  331 ttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtccacaa 412  Q
    |||||| ||||||| || || ||| ||||||| |||   |||||||||||| ||||||||||||  |||||||||| |||||    
T  33887968 ttatttgagtttatttactgacattagcacttgtgacattgtttgagagaatttatgaaaatagcttatgacatgttcacaa 33887887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 391
Target Start/End: Complemental strand, 4308715 - 4308647
Alignment:
Q  323 gaattggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaa 391  Q
    |||||| ||||||| |||| || || |||||||||||||  |||  ||||||| |||||||||||||||    
T  4308715 gaattgacttatttgagttaatttactggcataagcactagtgacactgtttgggagaacttatgaaaa 4308647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 406 - 490
Target Start/End: Complemental strand, 14492341 - 14492257
Alignment:
Q  406 tccacaaactatctaggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttataaa 490  Q
    |||||||||| ||||||||| || |||||| || || |||| || ||| ||||  |||||| || ||||||||||||| ||||||    
T  14492341 tccacaaactctctaggataacttatgaaaacagcttatagcttgtatcaaaacaatttgacttcattttatcttttggtataaa 14492257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 409
Target Start/End: Original strand, 32171309 - 32171393
Alignment:
Q  325 attggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtcca 409  Q
    |||| ||||||| || |||  ||||| |||||||||||  ||| |||||||||||| |||||||||| ||  ||||||| |||||    
T  32171309 attgtcttatttcagcttaagtattgacataagcacttgcgagactgtttgagagagcttatgaaaacagcttatgacaagtcca 32171393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 391
Target Start/End: Complemental strand, 32849324 - 32849256
Alignment:
Q  323 gaattggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaa 391  Q
    |||||| ||||||| || ||||||| |  ||||||||||| |||||||||||| |||||||||||||||    
T  32849324 gaattgacttatttaagcttatctactatcataagcacttgtgaggctgtttgggagaacttatgaaaa 32849256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 417
Target Start/End: Complemental strand, 14422623 - 14422565
Alignment:
Q  359 acttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtccacaaactat 417  Q
    |||| |||| |||||||| |||| ||||||||||||| ||||||||| |||||||||||    
T  14422623 acttctgagactgtttgaaagaatttatgaaaatagtttatgacatggccacaaactat 14422565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 325 - 394
Target Start/End: Original strand, 912573 - 912642
Alignment:
Q  325 attggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatag 394  Q
    ||||||||||||||| |||||||||| ||||||||||| ||   ||||||   |||||||||||||||||    
T  912573 attggcttattttaggttatctattgtcataagcacttgtggcactgtttagaagaacttatgaaaatag 912642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 397 - 486
Target Start/End: Original strand, 38047877 - 38047966
Alignment:
Q  397 tatgacatgtccacaaactatctaggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgtta 486  Q
    ||||||||||||| || || || ||||||||| |||||| || |  ||||  ||||||||||| |||||| || ||||||||||||||||    
T  38047877 tatgacatgtccataagctctccaggatagcttatgaaaacagcatatagtatatatgaaaataatttgactttattttatcttttgtta 38047966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 391
Target Start/End: Original strand, 5377117 - 5377189
Alignment:
Q  319 gttcgaattggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaa 391  Q
    ||||| |||||||||||| || |||||||||| ||||||||||| | || ||||| | || ||||||||||||    
T  5377117 gttcggattggcttatttgagcttatctattgacataagcacttgtaagactgttagcgataacttatgaaaa 5377189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 393
Target Start/End: Original strand, 21782598 - 21782650
Alignment:
Q  341 ttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaata 393  Q
    ||||||| |||||||| ||||| ||||||||||||||||| ||||||| ||||    
T  21782598 ttatctactggcataaacacttgtgaggctgtttgagagagcttatgacaata 21782650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 391
Target Start/End: Original strand, 25720341 - 25720409
Alignment:
Q  323 gaattggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaa 391  Q
    ||||| |||||||| || ||||||| |||||||||||||| |||| |||| ||||||| ||||| ||||    
T  25720341 gaattagcttatttgaggttatctactggcataagcacttgtgagactgtctgagagagcttataaaaa 25720409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 385
Target Start/End: Complemental strand, 36326152 - 36326092
Alignment:
Q  325 attggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaactta 385  Q
    |||| |||||||||| |||||||||||||||||||||  ||||  ||||||||| ||||||    
T  36326152 attgtcttattttagcttatctattggcataagcactggtgagattgtttgagaaaactta 36326092  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 379
Target Start/End: Original strand, 10771814 - 10771868
Alignment:
Q  325 attggcttattttagtttatctattggcataagcacttatgaggctgtttgagag 379  Q
    |||||||||||| || ||||||| |||||||||||||| ||||  ||||||||||    
T  10771814 attggcttatttgagcttatctactggcataagcacttgtgagattgtttgagag 10771868  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 387
Target Start/End: Complemental strand, 29336766 - 29336712
Alignment:
Q  333 attttagtttatctattggcataagcacttatgaggctgtttgagagaacttatg 387  Q
    |||| |||||||||||||||| |||||||| |||| ||| |||||||| ||||||    
T  29336766 atttgagtttatctattggcaaaagcacttgtgagactgattgagagagcttatg 29336712  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 488
Target Start/End: Original strand, 37526254 - 37526312
Alignment:
Q  430 atgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata 488  Q
    |||||| ||||| |||| |||||||||||   ||||||||||||||||||||| |||||    
T  37526254 atgaaaacaacttatagcttatatgaaaactttttgatttgattttatcttttattata 37526312  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 488
Target Start/End: Original strand, 37588415 - 37588473
Alignment:
Q  430 atgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata 488  Q
    |||||| ||||| |||| |||||||||||   ||||||||||||||||||||| |||||    
T  37588415 atgaaaacaacttatagcttatatgaaaactttttgatttgattttatcttttattata 37588473  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 488
Target Start/End: Original strand, 37690692 - 37690750
Alignment:
Q  430 atgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata 488  Q
    |||||| ||||| |||| |||||||||||   ||||||||||||||||||||| |||||    
T  37690692 atgaaaacaacttatagcttatatgaaaactttttgatttgattttatcttttattata 37690750  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 406
Target Start/End: Original strand, 499657 - 499738
Alignment:
Q  325 attggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgt 406  Q
    |||| ||||||| || ||| ||| || ||||||||| | | |||||||||| ||||||||||||||| ||  ||||||||||    
T  499657 attgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatgaaaacagcttatgacatgt 499738  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 409
Target Start/End: Complemental strand, 36639639 - 36639582
Alignment:
Q  352 cataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtcca 409  Q
    ||||||||||||| || ||||||||||||||||| |||||| |  |||||| ||||||    
T  36639639 cataagcacttataagactgtttgagagaacttacgaaaattgcttatgacgtgtcca 36639582  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 484
Target Start/End: Complemental strand, 40120122 - 40120081
Alignment:
Q  443 ataggttatatgaaaatcatttgatttgattttatcttttgt 484  Q
    |||| |||||||||||  ||||||||||||||||||||||||    
T  40120122 atagcttatatgaaaacaatttgatttgattttatcttttgt 40120081  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 490
Target Start/End: Original strand, 42181154 - 42181207
Alignment:
Q  437 caactcataggttatatgaaaatcatttgatttgattttatcttttgttataaa 490  Q
    ||||| |||| ||||||||||| ||||||| ||  |||||||||||||||||||    
T  42181154 caacttatagcttatatgaaaaccatttgactttgttttatcttttgttataaa 42181207  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 391
Target Start/End: Complemental strand, 7908028 - 7907960
Alignment:
Q  323 gaattggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaa 391  Q
    ||||||| | |||| |||||||||| |  ||||| |||||||||| |||||||  ||||||||||||||    
T  7908028 gaattggttcatttgagtttatctaataacataaacacttatgagactgtttggaagaacttatgaaaa 7907960  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 12595789 - 12595853
Alignment:
Q  424 tagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata 488  Q
    ||||| |||||| || ||||||| |||||||||||  |||| | || ||||||||||||||||||    
T  12595789 tagcttatgaaaccagctcatagtttatatgaaaacaatttaactttattttatcttttgttata 12595853  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 409
Target Start/End: Complemental strand, 26516559 - 26516467
Alignment:
Q  317 cagttcgaattggcttattttagtttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtcca 409  Q
    ||||| ||||| |||||||| ||||||| || |||||||||||| | || |  ||||| ||||| |||||||||| ||  ||||| |||||||    
T  26516559 cagtttgaattagcttatttgagtttatttactggcataagcacctgtgggaatgtttaagagagcttatgaaaacagcttatgatatgtcca 26516467  T

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Target: scaffold0015 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 407
Target Start/End: Original strand, 68921 - 68987
Alignment:
Q  341 ttatctattggcataagcacttatgaggctgtttgagagaacttatgaaaatagtgtatgacatgtc 407  Q
    |||| ||| ||||||||||||||||||  |||||| || |||||||||||| || ||||||||||||    
T  68921 ttatatataggcataagcacttatgagagtgtttgggaaaacttatgaaaacagcgtatgacatgtc 68987  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 359
Target Start/End: Original strand, 103886 - 103922
Alignment:
Q  323 gaattggcttattttagtttatctattggcataagca 359  Q
    |||||||||||||| |||||||||| |||||||||||    
T  103886 gaattggcttatttgagtttatctagtggcataagca 103922  T

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