View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4783_low_2 (Length: 482)
Name: NF4783_low_2
Description: NF4783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4783_low_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 155 - 482
Target Start/End: Original strand, 40550715 - 40551041
Alignment:
| Q |
155 |
aacctgtgtatatcagagtgtaaaaaacattattaaggaaggtgcaaacaaaatgtccctaattatgcctttgcaataacaaaaataccctttccccctg |
254 |
Q |
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| T |
40550715 |
aacctgtgtatatcagagtgtaaaaaacattatta-ggaaggcgcaaacgaaatgtccctaattatgcctttgcaataacaaaaataccctttccccctg |
40550813 |
T |
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| Q |
255 |
catgtgtacacaattatactgatttcacattatataatttggttgtgctgtttttatgagttttatttcctctagactgagcatatttaaatgattacca |
354 |
Q |
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| T |
40550814 |
catgagtacacagttatactgatttcacattatataatttagttgtgctgtttttatgagttttatttcctctagactgagcatatttaaatgattacca |
40550913 |
T |
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| Q |
355 |
tttttgcgcctgccccttccaatcagttccccactgaagatttaatctctccctgacttttggtgggaagtcataagttaaccagaaaggtgcctacaac |
454 |
Q |
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| T |
40550914 |
cttttgcgcctgccccttccaatcagttccccactgaagatttaatctctccctgacttttggtgggaagtcataagttaaccagaaaggtgcctacaac |
40551013 |
T |
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| Q |
455 |
agaaagccatcaagacgaacttctctaa |
482 |
Q |
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| T |
40551014 |
aaaaagccatcaagacgaacttctctaa |
40551041 |
T |
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