View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4783_low_3 (Length: 366)
Name: NF4783_low_3
Description: NF4783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4783_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 40579867 - 40580214
Alignment:
| Q |
1 |
cagagaccattccattccaacacaacaacctctcccactatgttgaaggatccgaggtcactaagtaatgctctgaatgtgtctgtgccctaaattatac |
100 |
Q |
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| T |
40579867 |
cagagaccattccattccaacacaacaacctctcccactatgttgaaggatccgaggtcactaagtaatgctctgaatgtgtctgtgccctaaattatac |
40579966 |
T |
|
| Q |
101 |
actgattattgggagttatagatccgagaaatcccttactttcatgcnnnnnnntaattcacttgtaatagaaaagaagagagaaactgaaaagaggata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40579967 |
actgattattgggagttatagatccgagaaatcccttactttcatgcaaaaaaataattcacttgtaatagaaaagaagagagaaactgaaaagaggata |
40580066 |
T |
|
| Q |
201 |
tggccttctacacataaaggcaaaagccatattcaagctttgctttattattttttgttttctctctttcctaaagactgcaaaagcttcattgtgtgga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40580067 |
tggccttctacacataaaggcaaaagccatattcaagctttgctttattattttttgttttctctctttcctaaagactgcaaaagcttcattgtgtgga |
40580166 |
T |
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| Q |
301 |
aactttgtctccatgccaatctcatatgccactatctatctcacttgc |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40580167 |
aactttgtctccatgccaatctcatatgccactatctatctcacttgc |
40580214 |
T |
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